1.13.11.54: acireductone dioxygenase [iron(II)-requiring]
This is an abbreviated version!
For detailed information about acireductone dioxygenase [iron(II)-requiring], go to the full flat file.

Word Map on EC 1.13.11.54
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1.13.11.54
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metalloproteinase
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ethylene
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s-adenosylmethionine
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mt1-mmp
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mta
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salvage
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polyamine
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adomet
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cupin
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metal-binding
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aci-reductone
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submergence
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deepwater
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adenosyltransferase
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methylthioribose
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phytosiderophore
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membrane-type
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mmp-2
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submergence-induced
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mt1-mmp-mediated
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medicine
- 1.13.11.54
- metalloproteinase
- ethylene
- s-adenosylmethionine
- mt1-mmp
- mta
-
salvage
- polyamine
- adomet
-
cupin
-
metal-binding
-
aci-reductone
-
submergence
-
deepwater
-
adenosyltransferase
- methylthioribose
-
phytosiderophore
-
membrane-type
- mmp-2
-
submergence-induced
-
mt1-mmp-mediated
- medicine
Reaction
Synonyms
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase, aci-reductone dioxygenase, acireductone dioxygenase, acireductone dioxygenase 1, ADI1, ARD, ARD', ARD1, ARD4, ARDp, Fe(II)-bound acireductone dioxygenase, Fe-ARD, MTCBP-1, MtnD, OsARD1, Ymr009p
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8138
22
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27
Metals Ions
Metals Ions on EC 1.13.11.54 - acireductone dioxygenase [iron(II)-requiring]
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Co2+
Fe2+
Iron
ligands are H96, H98, E102 and H140, the same as in the isoform requiring Ni2+, EC 1.13.11.54. Structural and functional differences between FeARD' and NiARD' forms are triggered by subtle differences in the local backbone. Both enzymes bind their respective metals with pseudo-octahedral geometry and both may lose a His ligand upon binding of substrate under anaerobic conditions
additional information
the identity of bound metal ion does not affect the oligomeric state of ARD
quantum-classical dynamics simulations with Co2+ bound. both Fe2+-like (reaction of EC 1.13.11.54) and Ni2+-like (reaction of EC 1.13.11.53) routes are accessible to Co2+-ARD, but the mechanism involves a bifurcating transition state, and so the exact product distribution is determined by the reaction dynamics
dependent on, acireductone dioxygenase 1 is an active metalloenzyme, Fe2+ is active site bound
Fe2+
apoenzyme is catalytically inactive. Addition of Fe2+ yields activity. Production of the enzyme in intact Escherichia coli depends on the availability of the Fe2+. Enzyme contains 0.9 Fe2+ per enzyme molecule
Fe2+
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dependent on. Fe2+ transmits electrons from the residues, coordinating it to bound dioxygen and populating its formerly p*-orbital. This leads to dioxygen splitting in the second intermediate and eventual access to the Fe2+-dependent acireductone dioxygenase reaction route
Fe2+
Ni2+ bound ARD is the most stable followed by Co2+ and Fe2+, and Mn2+-bound ARD being the least stable