Reference on EC 1.14.12.18 - biphenyl 2,3-dioxygenase
Please use the Reference Search for a specific query.
Please wait a moment until all data is loaded. This message will disappear when all data is loaded.
Resnick, S.M.; Torok, D.S.; Gibson, D.T.
Oxidation of carbazole to 3-hydroxycarbazole by naphthalene 1,2-dioxygenase and biphenyl 2,3-dioxygenase
FEMS Microbiol. Lett.
113
297-302
1993
Sphingobium yanoikuyae, Sphingobium yanoikuyae B8/36
Erickson, B.D.; Mondello, F.J.
Enhanced biodegradation of polychlorated biphenyls after site-directed mutagenesis of a biphenyl dioxygenase gene
Appl. Environ. Microbiol.
59
3858-3862
1993
Pseudomonas sp., Pseudomonas oleovorans, Pseudomonas sp. LB400, Pseudomonas oleovorans KF707
Haddock, J.D.; Horton, J.R.; Gibson, D.T.
Dihydroxylation and dechlorination of chlorinated biphenyls by purified biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400
J. Bacteriol.
177
20-26
1995
Pseudomonas sp., Pseudomonas sp. LB400
Seeger, M.; Timmis, K.N.; Hofer, B.
Degradation of chlorobiphenyls catalyzed by the bph-encoded biphenyl-2,3-dioxygenase and biphenyl-2,3-dihydrodiol-2,3-dehydrogenase of Pseudomonas sp. LB400
FEMS Microbiol. Lett.
133
259-264
1995
Pseudomonas sp., Pseudomonas sp. LB400
Haddock, J.D.; Gibson, D.T.
Purification and characterization of the oxygenase component of biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400
J. Bacteriol.
177
5834-5839
1995
Pseudomonas sp., Pseudomonas sp. LB400
Hurtubise, Y.; Barriault, D.; Sylvestre, M.
Characterization of active recombinant His-tagged oxygenase component of Comamonas testosteroni B-356 biphenyl dioxygenase
J. Biol. Chem.
271
8152-8156
1996
Comamonas testosteroni
Resnick, S.M.; Gibson, D.T.
Oxidation of 6,7-dihydro-5H-benzocycloheptene by bacterial strains expressing naphthalene dioxygenase, biphenyl dioxygenase, and toluene dioxygenase yields homochiral mono-ol or cis-diol enantiomers as major products
Appl. Environ. Microbiol.
62
1364-1368
1996
Sphingobium yanoikuyae, Sphingobium yanoikuyae B8/36
McKay, D.B.; Seeger, M.; Zielinski, M.; Hofer, B.; Timmis, K.N.
Heterologous expression of biphenyl dioxygenase-encoding genes from a gram-positive broad-spectrum polychlorinated biphenyl degrader and characterization of chlorobiphenyl oxidation by the gene products
J. Bacteriol.
179
1924-1930
1997
Rhodococcus globerulus, Rhodococcus globerulus P6
Broadus, R.M.; Haddock, J.D.
Purification and characterization of the NADH:ferredoxinBPH oxidoreductase component of biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400
Arch. Microbiol.
170
106-112
1998
Pseudomonas sp., Pseudomonas sp. LB400
Hurtubise, Y.; Barriault, D.; Sylvestre, M.
Involvement of the terminal oxygenase beta subunit in the biphenyl dioxygenase reactivity pattern toward chlorobiphenyls
J. Bacteriol.
180
5828-5835
1998
Comamonas testosteroni, Pseudomonas sp., Pseudomonas sp. LB400
Chebrou, H.; Hurtubise, Y.; Barriault, D.; Sylvestre, M.
Heterologous expression and characterization of the purified oxygenase component of Rhodococcus globerulus P6 biphenyl dioxygenase and of chimeras derived from it
J. Bacteriol.
181
4805-4811
1999
Rhodococcus globerulus, Rhodococcus globerulus P6
Arnett, C.M.; Parales, J.V.; Haddock, J.D.
Influence of chlorine substituents on rates of oxidation of chlorinated biphenyls by the biphenyl dioxygenase of Burkholderia sp. strain LB400
Appl. Environ. Microbiol.
66
2928-2933
2000
Pseudomonas sp., Pseudomonas sp. LB400
Seeger, M.; Camara, B.; Hofer, B.
Dehalogenation, denitration, dehydroxylation, and angular attack on substituted biphenyls and related compounds by a biphenyl dioxygenase
J. Bacteriol.
183
3548-3555
2001
Burkholderia sp., Pseudomonas sp., Pseudomonas sp. LB400, Burkholderia sp. LB400
Imbeault, N.Y.; Powlowski, J.B.; Colbert, C.L.; Bolin, J.T.; Eltis, L.D.
Steady-state kinetic characterization and crystallization of a polychlorinated biphenyl-transforming dioxygenase
J. Biol. Chem.
275
12430-12437
2000
Comamonas testosteroni
Kim, S.Y.; Jung, J.; Lim, Y.; Ahn, J.H.; Kim, S.I.; Hur, H.G.
cis-2', 3'-Dihydrodiol production on flavone B-ring by biphenyl dioxygenase from Pseudomonas pseudoalcaligenes KF707 expressed in Escherichia coli
Antonie van Leeuwenhoek
84
261-268
2003
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
L'Abbee J.B.; Barriault, D.; Sylvestre, M.
Metabolism of dibenzofuran and dibenzo-p-dioxin by the biphenyl dioxygenase of Burkholderia xenovorans LB400 and Comamonas testosteroni B-356
Appl. Microbiol. Biotechnol.
67
506-514
2005
Comamonas testosteroni, Paraburkholderia xenovorans
Barriault, D.; Simard, C.; Chatel, H.; Sylvestre, M.
Characterization of hybrid biphenyl dioxygenases obtained by recombining Burkholderia sp. strain LB400 bphA with the homologous gene of Comamonas testosteroni B-356
Can. J. Microbiol.
47
1025-1032
2001
Burkholderia sp., Comamonas testosteroni
Francova, K.; Mackova, M.; Macek, T.; Sylvestre, M.
Ability of bacterial biphenyl dioxygenases from Burkholderia sp. LB400 and Comamonas testosteroni B-356 to catalyse oxygenation of ortho-hydroxychlorobiphenyls formed from PCBs by plants
Environ. Pollut.
127
41-48
2004
Burkholderia sp., Comamonas testosteroni, Burkholderia sp. LB400
Suenaga, H.; Mitsuoka, M.; Ura, Y.; Watanabe, T.; Furukawa, K.
Directed evolution of biphenyl dioxygenase: emergence of enhanced degradation capacity for benzene, toluene, and alkylbenzenes
J. Bacteriol.
183
5441-5444
2001
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
Barriault, D.; Plante, M.M.; Sylvestre, M.
Family shuffling of a targeted bphA region to engineer biphenyl dioxygenase
J. Bacteriol.
184
3794-3800
2002
Burkholderia sp., Comamonas testosteroni, Burkholderia sp. LB4000
Zielinski, M.; Kahl, S.; Hecht, H.J.; Hofer, B.
Pinpointing biphenyl dioxygenase residues that are crucial for substrate interaction
J. Bacteriol.
185
6976-6980
2003
Burkholderia sp., Burkholderia sp. LB400
Barriault, D.; Sylvestre, M.
Evolution of the biphenyl dioxygenase BphA from Burkholderia xenovorans LB400 by random mutagenesis of multiple sites in region III
J. Biol. Chem.
279
47480-47488
2004
Paraburkholderia xenovorans
Barriault, D.; Lepine, F.; Mohammadi, M.; Milot, S.; Leberre, N.; Sylvestre, M.
Revisiting the regiospecificity of Burkholderia xenovorans LB400 biphenyl dioxygenase toward 2,2'-dichlorobiphenyl and 2,3,2',3'-tetrachlorobiphenyl
J. Biol. Chem.
279
47489-47496
2004
Paraburkholderia xenovorans
Furusawa, Y.; Nagarajan, V.; Tanokura, M.; Masai, E.; Fukuda, M.; Senda, T.
Crystal structure of the terminal oxygenase component of biphenyl dioxygenase derived from Rhodococcus sp. strain RHA1
J. Mol. Biol.
342
1041-1052
2004
Rhodococcus sp. (Q53122), Rhodococcus sp. RHA1 (Q53122)
Zielinski, M.; Backhaus, S.; Hofer, B.
The principal determinants for the structure of the substrate-binding pocket are located within a central core of a biphenyl dioxygenase alpha subunit
Microbiology
148
2439-2448
2002
Burkholderia sp., Rhodococcus globerulus, Rhodococcus globerulus P6, Burkholderia sp. LB400
Han, J.; Kim, S.Y.; Jung, J.; Lim, Y.; Ahn, J.H.; Kim, S.I.; Hur, H.G.
Epoxide formation on the aromatic B ring of flavanone by biphenyl dioxygenase of Pseudomonas pseudoalcaligenes KF707
Appl. Environ. Microbiol.
71
5354-5361
2005
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
Zielinski, M.; Kahl, S.; Standfuss-Gabisch, C.; Camara, B.; Seeger, M.; Hofer, B.
Generation of novel-substrate-accepting biphenyl dioxygenases through segmental random mutagenesis and identification of residues involved in enzyme specificity
Appl. Environ. Microbiol.
72
2191-2199
2006
Paraburkholderia xenovorans
Witzig, R.; Junca, H.; Hecht, H.J.; Pieper, D.H.
Assessment of toluene/biphenyl dioxygenase gene diversity in benzene-polluted soils: links between benzene biodegradation and genes similar to those encoding isopropylbenzene dioxygenases
Appl. Environ. Microbiol.
72
3504-3514
2006
Pseudomonas aeruginosa, Burkholderia sp. (O86136), Paraburkholderia xenovorans (P37333), Comamonas testosteroni (Q46372), Comamonas testosteroni (Q8KZP9), Pseudomonas oleovorans (Q52028), Pseudomonas sp. (Q52438), Rhodococcus globerulus (Q52757), Rhodococcus sp. (Q53122), Rhodococcus erythropolis (Q79EP8), Pseudomonas aeruginosa JI104, Rhodococcus globerulus P6 (Q52757), Pseudomonas oleovorans KF707 (Q52028), Rhodococcus erythropolis TA421 (Q79EP8)
Suenaga, H.; Goto, M.; Furukawa, K.
Active-site engineering of biphenyl dioxygenase: effect of substituted amino acids on substrate specificity and regiospecificity
Appl. Microbiol. Biotechnol.
71
168-176
2006
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
Suenaga, H.; Sato, M.; Goto, M.; Takeshita, M.; Furukawa, K.
Steady-state kinetic characterization of evolved biphenyl dioxygenase, which acquired novel degradation ability for benzene and toluene
Biosci. Biotechnol. Biochem.
70
1021-1025
2006
Pseudomonas oleovorans, Paraburkholderia xenovorans
Vezina, J.; Barriault, D.; Sylvestre, M.
Family shuffling of soil DNA to change the regiospecificity of Burkholderia xenovorans LB400 biphenyl dioxygenase
J. Bacteriol.
189
779-788
2007
Paraburkholderia xenovorans
Yu, C.L.; Liu, W.; Ferraro, D.J.; Brown, E.N.; Parales, J.V.; Ramaswamy, S.; Zylstra, G.J.; Gibson, D.T.; Parales, R.E.
Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1
J. Ind. Microbiol. Biotechnol.
34
311-324
2007
Sphingobium yanoikuyae, Sphingobium yanoikuyae B1
Shindo, K.; Nakamura, R.; Osawa, A.; Kagami, O.; Kanoh, K.; Furukawa, K.; Misawa, N.
Biocatalytic synthesis of monocyclic arene-dihydrodiols and -diols by Escherichia coli cells expressing hybrid toluene/biphenyl dioxygenase and dihydrodiol dehydrogenase genes
J. Mol. Catal. B
35
134-141
2005
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
-
Master, E.R.; Agar, N.Y.; Gomez-Gil, L.; Powlowski, J.B.; Mohn, W.W.; Eltis, L.D.
Biphenyl dioxygenase from an arctic isolate is not cold adapted
Appl. Environ. Microbiol.
74
3908-3911
2008
Pseudomonas sp.
Shindo, K.; Shindo, Y.; Hasegawa, T.; Osawa, A.; Kagami, O.; Furukawa, K.; Misawa, N.
Synthesis of highly hydroxylated aromatics by evolved biphenyl dioxygenase and subsequent dihydrodiol dehydrogenase
Appl. Microbiol. Biotechnol.
75
1063-1069
2007
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
Mohammadi, M.; Chalavi, V.; Novakova-Sura, M.; Laliberte, J.; Sylvestre, M.
Expression of bacterial biphenyl-chlorobiphenyl dioxygenase genes in tobacco plants
Biotechnol. Bioeng.
97
496-505
2007
Paraburkholderia xenovorans
Ferraro, D.J.; Brown, E.N.; Yu, C.; Parales, R.E.; Gibson, D.T.; Ramaswamy, S.
Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1
BMC Struct. Biol.
7
10
2007
Sphingobium yanoikuyae, Sphingobium yanoikuyae B1
Yang, X.; Liu, X.; Song, L.; Xie, F.; Zhang, G.; Qian, S.
Characterization and functional analysis of a novel gene cluster involved in biphenyl degradation in Rhodococcus sp. strain R04
J. Appl. Microbiol.
103
2214-2224
2007
Rhodococcus sp., Rhodococcus sp. R04
Gomez-Gil, L.; Kumar, P.; Barriault, D.; Bolin, J.T.; Sylvestre, M.; Eltis, L.D.
Characterization of biphenyl dioxygenase of Pandoraea pnomenusa B-356 as a potent polychlorinated biphenyl-degrading enzyme
J. Bacteriol.
189
5705-5715
2007
Paraburkholderia xenovorans, Pandoraea pnomenusa, Pandoraea pnomenusa B-356
Chadhain, S.M.; Moritz, E.M.; Kim, E.; Zylstra, G.J.
Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1
J. Ind. Microbiol. Biotechnol.
34
605-613
2007
Sphingobium yanoikuyae, Sphingobium yanoikuyae B1
Kagami, O.; Shindo, K.; Kyojima, A.; Takeda, K.; Ikenaga, H.; Furukawa, K.; Misawa, N.
Protein engineering on biphenyl dioxygenase for conferring activity to convert 7-hydroxyflavone and 5,7-dihydroxyflavone (chrysin)
J. Biosci. Bioeng.
106
121-127
2008
Pseudomonas putida, Pseudomonas putida KF715
Seo, J.; Kang, S.I.; Kim, M.; Won, D.; Takahashi, H.; Ahn, J.H.; Chong, Y.; Lee, E.; Lim, Y.; Kanaly, R.A.; Han, J.; Hur, H.G.
TD-DFT-assisted absolute configuration determination of cis-dihydrodiol metabolite produced from isoflavone by biphenyl dioxygenase
Anal. Biochem.
397
29-36
2009
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
Sul, W.J.; Park, J.; Quensen, J.F.; Rodrigues, J.L.; Seliger, L.; Tsoi, T.V.; Zylstra, G.J.; Tiedje, J.M.
DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment
Appl. Environ. Microbiol.
75
5501-5506
2009
Bacteria, Paraburkholderia xenovorans LB400
Uhlik, O.; Jecna, K.; Mackova, M.; Vlcek, C.; Hroudova, M.; Demnerova, K.; Paces, V.; Macek, T.
Biphenyl-metabolizing bacteria in the rhizosphere of horseradish and bulk soil contaminated by polychlorinated biphenyls as revealed by stable isotope probing
Appl. Environ. Microbiol.
75
6471-6477
2009
Achromobacter sp., Methylophilus sp., Pseudomonas alcaligenes, Paenibacillus sp., Variovorax sp., Stenotrophomonas sp., Hydrogenophaga sp., Methylovorus, Pseudomonas alcaligenes B-357
Sylvestre, M.; Macek, T.; Mackova, M.
Transgenic plants to improve rhizoremediation of polychlorinated biphenyls (PCBs)
Curr. Opin. Biotechnol.
20
242-247
2009
Rhodococcus jostii RHA1, Paraburkholderia xenovorans LB400
Correa, P.A.; Lin, L.; Just, C.L.; Hu, D.; Hornbuckle, K.C.; Schnoor, J.L.; Van Aken, B.
The effects of individual PCB congeners on the soil bacterial community structure and the abundance of biphenyl dioxygenase genes
Environ. Int.
36(
901-906
2010
Pseudomonas sp. KKS102
Correa, P.A.; Lin, L.; Just, C.L.; Hu, D.; Hornbuckle, K.C.; Schnoor, J.L.; Van Aken, B.
The effects of individual PCB congeners on the soil bacterial community structure and the abundance of biphenyl dioxygenase genes
Environ. Int.
36
901-906
2010
Rhodococcus erythropolis, Rhodococcus jostii RHA1, Rhodococcus sp. M5, Rhodococcus erythropolis BD2
Correa, P.A.; Lin, L.; Just, C.L.; Hu, D.; Hornbuckle, K.C.; Schnoor, J.L.; Van Aken, B.
The effects of individual PCB congeners on the soil bacterial community structure and the abundance of biphenyl dioxygenase genes
Environ. Int.
36
906-910
2010
Comamonas testosteroni, Pseudomonas oleovorans, Rhodococcus erythropolis, Rhodococcus globerulus, Paraburkholderia xenovorans LB400, Burkholderia sp. JB1, Pseudomonas sp. B4, Rhodococcus globerulus P6, Pseudomonas oleovorans KF707, Rhodococcus erythropolis TA421
Baig, M.S.; Manickam, N.
Homology modeling and docking studies of Comamonas testosteroni B-356 biphenyl-2,3-dioxygenase involved in degradation of polychlorinated biphenyls
Int. J. Biol. Macromol.
46
47-53
2010
Comamonas testosteroni (Q46372)
Pieper, D.; Seeger, M.
Bacterial metabolism of polychlorinated biphenyls
J. Mol. Microbiol. Biotechnol.
15
121-138
2008
Pseudomonas putida, Rhodococcus sp., Paraburkholderia xenovorans LB400, Rhodococcus sp. RHA1, Pseudomonas putida KF715
Vezina, J.; Barriault, D.; Sylvestre, M.
Diversity of the C-terminal portion of the biphenyl dioxygenase large subunit
J. Mol. Microbiol. Biotechnol.
15
139-151
2008
Cupriavidus necator, Comamonas testosteroni, Pseudomonas alcaligenes, Pseudomonas oleovorans, Rhodococcus globerulus, Pandoraea pnomenusa, Paraburkholderia xenovorans LB400, Cupriavidus necator H850, Pseudomonas sp. Cam-1, Pseudomonas sp. JB-1, Pseudomonas sp. KKS102, uncultured soil bacterium (A5YWJ0), uncultured soil bacterium (A5YWJ1), uncultured soil bacterium (A5YWJ2), uncultured soil bacterium (A5YWJ3), uncultured soil bacterium (A5YWJ4), uncultured soil bacterium (A5YWJ5), uncultured soil bacterium (A5YWJ6), uncultured soil bacterium (A5YWJ7), uncultured soil bacterium (A5YWJ8), uncultured soil bacterium (A5YWJ9), uncultured soil bacterium (A5YWK0), uncultured soil bacterium (A5YWK1), uncultured soil bacterium (A5YWK2), uncultured soil bacterium (A5YWK3), uncultured soil bacterium (A5YWK4), uncultured soil bacterium (A5YWK5), uncultured soil bacterium (A5YWK6), Acidovorax sp. B-206 (A6N2I5), Paenibacillus sp. B-257 (A6N2I6), bacterium B-358 (A6N2I7), bacterium YT01 (A6N2I8), Comamonas testosteroni TK102, Rhodococcus globerulus P6, Cupriavidus necator A5, Pseudomonas alcaligenes B-357, Pseudomonas oleovorans KF707, Pandoraea pnomenusa B-356
Capodicasa, S.; Fedi, S.; Carnevali, M.; Caporali, L.; Viti, C.; Fava, F.; Zannoni, D.
Terminal-restriction fragment length polymorphism analysis of biphenyl dioxygenase genes from a polychlorinated biphenyl-polluted soil
Res. Microbiol.
160
742-750
2009
Bacteria, Pseudomonas sp., Pseudomonas oleovorans, Paraburkholderia xenovorans LB400 (P37333), Paraburkholderia xenovorans LB400, Pseudomonas sp. Cam1, Pseudomonas oleovorans KF707
Kumar, P.; Gomez-Gil, L.; Mohammadi, M.; Sylvestre, M.; Eltis, L.D.; Bolin, J.T.
Anaerobic crystallization and initial X-ray diffraction data of biphenyl 2,3-dioxygenase from Burkholderia xenovorans LB400: addition of agarose improved the quality of the crystals
Acta Crystallogr. Sect. F
67
59-62
2011
Paraburkholderia xenovorans, Paraburkholderia xenovorans (P37333), Paraburkholderia xenovorans (P37334)
Seo, J.; Kang, S.I.; Won, D.; Kim, M.; Ryu, J.Y.; Kang, S.W.; Um, B.H.; Pan, C.H.; Ahn, J.H.; Chong, Y.; Kanaly, R.A.; Han, J.; Hur, H.G.
Absolute configuration-dependent epoxide formation from isoflavan-4-ol stereoisomers by biphenyl dioxygenase of Pseudomonas pseudoalcaligenes strain KF707
Appl. Microbiol. Biotechnol.
89
1773-1782
2011
Pseudomonas oleovorans, Pseudomonas oleovorans KF707
Kumar, P.; Mohammadi, M.; Viger, J.F.; Barriault, D.; Gomez-Gil, L.; Eltis, L.D.; Bolin, J.T.; Sylvestre, M.
Structural insight into the expanded PCB-degrading abilities of a biphenyl dioxygenase obtained by directed evolution
J. Mol. Biol.
405
531-547
2011
Paraburkholderia xenovorans
Ohmori, T.; Morita, H.; Tanaka, M.; Tomoi, M.; Miyauchi, K.; Kasai, D.; Furukawa, K.; Masai, E.; Fukuda, M.
Expression in Escherichia coli of biphenyl 2,3-dioxygenase genes from a Gram-positive polychlorinated biphenyl degrader, Rhodococcus jostii RHA1
Biosci. Biotechnol. Biochem.
75
26-33
2011
Rhodococcus jostii
Ohmori, T.; Morita, H.; Tanaka, M.; Miyauchi, K.; Kasai, D.; Furukawa, K.; Miyashita, K.; Ogawa, N.; Masai, E.; Fukuda, M.
Development of a strain for efficient degradation of polychlorinated biphenyls by patchwork assembly of degradation pathways
J. Biosci. Bioeng.
111
437-442
2011
Rhodococcus jostii
Cao, Y.M.; Xu, L.; Jia, L.Y.
Analysis of PCBs degradation abilities of biphenyl dioxygenase derived from Enterobacter sp. LY402 by molecular simulation
New Biotechnol.
29
90-98
2011
Enterobacter sp., Enterobacter sp. LY402
Zhao, Q.; Bilal, M.; Yue, S.; Hu, H.; Wang, W.; Zhang, X.
Identification of biphenyl 2, 3-dioxygenase and its catabolic role for phenazine degradation in Sphingobium yanoikuyae B1
J. Environ. Manag.
204
494-501
2017
Sphingobium yanoikuyae, Sphingobium yanoikuyae B1
Shumkova, E.; Egorova, D.; Korsakova, E.; Dorofeeva, L.; Plotnikova, E.
Molecular biological characterization of biphenyl-degrading bacteria and identification of the biphenyl 2,3-dioxygenase alpha-subunit genes
Microbiology (Russian Federation)
83
160-168
2014
Rhodococcus sp. G10 (S5GDK5)
html completed