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BIO2 protein (Arabidopsis thaliana clone pMP101 gene BIO2 reduced)
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-
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biotin synthase (Saccharomyces cerevisiae strain 20B-12 clone pUCH2.4 gene BIO2)
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-
-
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biotin synthase (Treponema pallidum gene TP0228)
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-
-
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biotin synthetase
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-
-
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biotin synthetase (Aquifex aeolicus gene bioB)
-
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biotin synthetase (Arabidopsis thaliana clone pMB101 gene BIO2 reduced)
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biotin synthetase (Bacillus subtilis gene bioB)
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biotin synthetase (Chlamydia trachomatis gene birA)
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GenBank AE000716-derived protein GI 2983482
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GenBank AE001204-derived protein GI 3322497
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GenBank AE001343-derived protein GI 3329182
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GenBank AF008220-derived protein GI 2293187
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GenBank U24147-derived protein
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GenBank U31806-derived protein GI 1403662
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GenBank U51869-derived protein GI 1277029
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GenBank Z99119-derived protein GI 2635504
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synthetase, biotin
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synthetase, biotin (Arabidopsis thaliana clone lambdaBIO2 gene bioB)
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synthetase, biotin (Arabidopsis thaliana clone pMP101 gene BIO2 reduced)
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synthetase, biotin (Arabidopsis thaliana clone pYESCBS1 gene bioB)
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synthetase, biotin (Bacillus subtilis clone pBIO100/pBIO350/pBIO201 gene bioB)
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synthetase, biotin (Bacillus subtilis gene bioB)
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synthetase, biotin (Saccharomyces cerevisiae strain 20B-12 clone pUCH2.4 gene BIO2 reduced)
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Bio2
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BioB
-
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biotin synthase
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NCgl0071
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dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
mechanism
-
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
mechanism
-
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
radical chemistry is involved in the mechanism of biotin synthase
-
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
the reaction proceeds in two distinct steps involving mercaptodethiobiotin as an intermediate
Lavandula vera
-
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
reaction proceeds via intermediate involving the (2Fe-2S) cluster, with a rate-determining step following the formation of this intermediate
-
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
substrates are placed between the (4Fe-4S) cluster, essential for radical generation, and the (2Fe-2S) cluster
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin = biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
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9-mercaptodethiobiotin + S-adenosyl-L-methionine
biotin + ?
-
Substrates: presence of S-adenosyl-L-methionine is required
Products: -
?
9-mercaptodethiobiotin + sulfur
biotin
-
Substrates: -
Products: -
?
9-mercaptodethiobiotin + [S] + S-adenosyl-L-methionine
biotin + ?
Substrates: -
Products: -
?
9-mercaptodethiobiotin + [S] + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
-
Substrates: -
Products: -
ir
dethiobiotin + Na2S
biotin
-
Substrates: -
Products: -
?
dethiobiotin + Na2Se
selenobiotin
-
Substrates: enzyme depleted of iron and sulfur and reconstituted with FeCl3 and Na2Se yielding an [2Fe-2Se]2+ cluster. Activity with Na2Se is lower than that of the as-isolated enzyme with Na2S
Products: -
?
dethiobiotin + S-adenosyl-L-methionine
biotin + ?
-
Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
dethiobiotin + sulfur + 2 S-adenosyl-L-methionine
biotin + 2 L-methionine + 2 5'-deoxyadenosine
dethiobiotin + sulfur + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin
biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
dethiobiotin + sulfur-(sulfur carrier) + S-adenosyl-L-methionine + reduced [2Fe-2S] ferredoxin
biotin + (sulfur carrier) + L-methionine + 5'-deoxyadenosine + oxidized [2Fe-2S] ferredoxin
-
Substrates: -
Products: -
?
dethiobiotin + [S] + 2 S-adenosyl-L-methionine
biotin + 2 L-methionine + 2 5'-deoxyadenosine
-
Substrates: -
Products: -
ir
dethiobiotin + [S] + S-adenosyl-L-methionine
9-mercaptodethiobiotin + L-methionine + 5'-deoxyadenosine
-
Substrates: 9-mercaptodethiobiotin is generated as a ligand to the [2Fe-2S]2+ cluster during the reaction
Products: -
ir
dethiobiotin + [S] + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
L-cysteine
L-alanine + sulfide
-
Substrates: enzyme displays cysteine desulfurase activity, providing it with the ability to mobilize sulfur from free cysteine
Products: -
?
additional information
?
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dethiobiotin + sulfur
biotin
-
Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
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Substrates: expression of the BIO2 gene appears to be induced under biotin-limiting conditions
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
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645580, 645583, 645585, 645586, 645587, 645593, 645594, 645598, 645599, 645600, 645603, 645605, 645606, 645607, 645608, 645609, 645612, 645615, 661113 Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: insertion of a sulfur atom between the inactive methyl and methylene carbon atoms adjacent to the imidazolinone ring
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: insertion of a sulfur atom between the saturated C6 and C9 carbons of dethiobiotin
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: hypothesis: sulfur of biotin is derived from the [Fe-S] center of the enzyme
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: catalyzes the last step of the biosynthesis of biotin
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: biotin synthase is active for only one turnover, during which the [2Fe-2S]2+ cluster is destroyed, one sulfide from the cluster is incorporated as the biotin thiophane sulfur, while Fe2+ ions and the remaining S2- ion are released from the protein
Products: -
?
dethiobiotin + sulfur
biotin
Lavandula vera
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Substrates: intermediate is 9-mercaptodethiobiotin
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: -
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: ultimate sulfur donor has not yet been identified
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: hypothesis: sulfur of biotin is derived from the [Fe-S] center of the enzyme
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: catalyzes the last step of the biosynthesis of biotin
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: -
Products: -
?
dethiobiotin + sulfur + 2 S-adenosyl-L-methionine
biotin + 2 L-methionine + 2 5'-deoxyadenosine
-
Substrates: 9-mercaptodethiobiotin is formed as a competent catalytic intermediate by Escherichia coli biotin synthase
Products: -
?
dethiobiotin + sulfur + 2 S-adenosyl-L-methionine
biotin + 2 L-methionine + 2 5'-deoxyadenosine
-
Substrates: The biotin synthase (BioB) reaction does not require pyridoxal phosphate in vivo. Therefore, the biotin sulfur atom cannot be derived via an intrinsic pyridoxal phosphate-dependent BioB cysteine desulfurase activity
Products: -
?
dethiobiotin + sulfur + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
-
Substrates: -
Products: -
?
dethiobiotin + sulfur + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
Substrates: -
Products: -
?
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin
biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
Substrates: -
Products: -
?
dethiobiotin + sulfur-(sulfur carrier) + 2 S-adenosyl-L-methionine + 2 reduced [2Fe-2S] ferredoxin
biotin + (sulfur carrier) + 2 L-methionine + 2 5'-deoxyadenosine + 2 oxidized [2Fe-2S] ferredoxin
Substrates: -
Products: -
?
dethiobiotin + [S] + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
-
Substrates: -
Products: -
?
dethiobiotin + [S] + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
Substrates: -
Products: -
ir
dethiobiotin + [S] + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
-
Substrates: overall reaction
Products: -
ir
dethiobiotin + [S] + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
Substrates: dethiobiotin is 5-methyl-2-oxo-4-imidazolidinehexanoic acid
Products: -
?
additional information
?
-
Substrates: rate-limiting enzyme for biotin synthesis
Products: -
?
additional information
?
-
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Substrates: rate-limiting enzyme for biotin synthesis
Products: -
?
additional information
?
-
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Substrates: cysteine and S-adenosylmethionine are no sulfur donors
Products: -
?
additional information
?
-
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Substrates: covalent alteration of enzyme during turnover suggesting a role of protein as a reagent, not a catalyst
Products: -
?
additional information
?
-
-
Substrates: enzyme has very modest catalytic power. 20-60 molecules of biotin are formed per molecule of enzyme, which is easily degraded. Substantial unfolding of enzyme is required to allow rebuilding of the (2Fe-2S) cluster after each turnover. Such unfolding allows restoration of the cluster, but at the cost of exposure of the protein to proteolytic attack
Products: -
?
additional information
?
-
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Substrates: reaction has a turnover of one. Enzyme has no cysteine desulfurase activity, the required sulfide has to be added as Na2S. The active enzyme cannot be fully restored after one turn
Products: -
?
additional information
?
-
-
Substrates: enzyme depleted of iron and sulfur and reconstituted with FeCl3 and Na2Se to enable formation an [2Fe-2Se]2+ cluster. The [2Fe-2Se]2+ enzyme yields a mixture of biotin and selenobiotin in presence of Na2S
Products: -
?
additional information
?
-
-
Substrates: methionine and cysteine are no sulfur donors
Products: -
?
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dethiobiotin + sulfur
biotin
dethiobiotin + sulfur + 2 S-adenosyl-L-methionine
biotin + 2 L-methionine + 2 5'-deoxyadenosine
dethiobiotin + sulfur + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
dethiobiotin + sulfur-(sulfur carrier) + S-adenosyl-L-methionine + reduced [2Fe-2S] ferredoxin
biotin + (sulfur carrier) + L-methionine + 5'-deoxyadenosine + oxidized [2Fe-2S] ferredoxin
-
Substrates: -
Products: -
?
additional information
?
-
dethiobiotin + sulfur
biotin
-
Substrates: expression of the BIO2 gene appears to be induced under biotin-limiting conditions
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: hypothesis: sulfur of biotin is derived from the [Fe-S] center of the enzyme
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: catalyzes the last step of the biosynthesis of biotin
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: biotin synthase is active for only one turnover, during which the [2Fe-2S]2+ cluster is destroyed, one sulfide from the cluster is incorporated as the biotin thiophane sulfur, while Fe2+ ions and the remaining S2- ion are released from the protein
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: hypothesis: sulfur of biotin is derived from the [Fe-S] center of the enzyme
Products: -
?
dethiobiotin + sulfur
biotin
-
Substrates: catalyzes the last step of the biosynthesis of biotin
Products: -
?
dethiobiotin + sulfur + 2 S-adenosyl-L-methionine
biotin + 2 L-methionine + 2 5'-deoxyadenosine
-
Substrates: 9-mercaptodethiobiotin is formed as a competent catalytic intermediate by Escherichia coli biotin synthase
Products: -
?
dethiobiotin + sulfur + 2 S-adenosyl-L-methionine
biotin + 2 L-methionine + 2 5'-deoxyadenosine
-
Substrates: The biotin synthase (BioB) reaction does not require pyridoxal phosphate in vivo. Therefore, the biotin sulfur atom cannot be derived via an intrinsic pyridoxal phosphate-dependent BioB cysteine desulfurase activity
Products: -
?
dethiobiotin + sulfur + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
-
Substrates: -
Products: -
?
dethiobiotin + sulfur + S-adenosyl-L-methionine
biotin + L-methionine + 5'-deoxyadenosine
Substrates: -
Products: -
?
additional information
?
-
Substrates: rate-limiting enzyme for biotin synthesis
Products: -
?
additional information
?
-
-
Substrates: rate-limiting enzyme for biotin synthesis
Products: -
?
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Fe2+
-
highly stimulates
FeCl3
-
-
FeCl3
-
required for formation of mixed [Fe-S] cluster state
FeCl3
-
binds 1 [Fe4-S4] cluster per monomer
FeCl3
-
sulfur of the iron-sulfur cluster is provided by cysteine desulfurase EC 2.8.1.7
FeCl3
-
enhances activity 3-4fold at 0.1 mM
Iron
-
the enzyme contains an iron-sulfur cluster
Iron
-
[4Fe-4S] is involved in cleavage of S-adenosylmethionine
Iron
-
aerobically purified enzyme contains 1.2-1.5 [2Fe-2S] clusters per monomer. Upon reduction the [Fe2-S2] clusters are converted to [Fe4-S4] clusters. The dominant stable cluster state for the enzyme is a dimer containing 2 [Fe2-S2] clusters and 2 [Fe4-S4] clusters
Iron
-
1 [2Fe-2S] cluster per monomer, but enzyme can be reconstituted to contain an additional [4Fe-4S] cluster, both clusters must be present for tight substrate binding
Iron
[2Fe-2S] and [4Fe-4S] cluster
Iron
-
[Fe4-S4] cluster binds S-adenosylmethionine
Iron
-
1 [2Fe-2S] and 1 [4Fe-4S] cluster per monomer are essential for optimal activity
Iron
-
1 [2Fe-2S] per monomer, but enzyme is more active when reconstituted with an additional [4Fe-4S] cluster
Iron
-
in a partially purified fraction the presence of a S2- source and Fe2+ converts the predominant [2Fe-2S] into a 1:1 mixture of [2Fe-2S] and [4Fe-4S], reduced [4Fe-4S] is involved in mediating the cleavage of S-adenosylmethionine and reduced [2Fe-2S] is the sulfur source of biotin
Iron
-
presence of a [2Fe-2S] cluster
Iron
-
the enzyme contains an iron-sulfur cluster
Iron
-
the 104000 Da dimeric enzyme form contains a single [2Fe-2S] cluster per dimer
Iron
-
the 82000 Da dimeric enzyme form contains one [2Fe-2S]cluster per monomer
Iron
-
enzyme contains a (4FE-4S) cluster that is stable during the reaction and bound to S-adenosyl-L-methionine. Additionally, enzyme contains a (2Fe-2S) cluster. About 2/3 of the (2Fe-2S) clusters are degraded by the end of a turnover experiment, degradation is initiated by reduction of the cluster
Iron
-
enzyme contains two distinct Fe-S cluster binding sites, one site accomodates a (2Fe-2S)2+ cluster with partial noncysteinyl ligation, the other site accomodates a (4Fe-4S)2+ cluster that binds S-adenosyl-L-methionine and undergoes O2-induced degradation
Iron
-
in as-prepared sample, present as (2Fe-2s)2+ cluster with incomplete cysteinyl-S coordination, reversible conversion by dithionite yields (4Fe-4S)2+, Mossbauer studies
Iron
-
the as-isolated form of enzyme contains an air-stable [2Fe-2S]2+ center. Enzyme can additionally accomodate an air-sensitive [4Fe-4S]2+ center which is generated by incubation under anaerobic conditions with Fe2+ and S2-. With respect to iron cluster content and characteristics, mutants N151A, H152A, N153A, D155A are similar to wild-type
Iron
-
the [2Fe-2S]2+ cluster is implicated in the sulfur insertion step
Iron
-
[2Fe-2S]2+ cluster coordinated by C97, C128, C188 and R260. Wild-type enzyme contains 1.6 iron atoms per monomer
Iron
-
BioB appears to be resistant to degradation and capable of multiple turnovers only under high-iron conditions that favor repair of the FeS clusters, a process most likely mediated by the Isc or Suf iron-sulfur cluster assembly systems.
Iron
-
loss of the FeS clusters results in decreased thermal stability and apparent localized unfolding of BioB, particularly in the regions around Arg168 and Arg245, but not global unfolding
Iron
-
the [2Fe-2S]2+ cluster is both the sulfur-donating substrate and the sulfur-oxidizing cofactor
Iron
-
presence of a [2Fe-2S] cluster
Iron
-
the enzyme contains an iron-sulfur cluster
Iron
-
Fe/S cluster assembly of biotin synthase strongly depends on Isu1 and Isu2 proteins
Iron
-
Fe/S cluster assembly on Bio2 strongly depends on the Isu1 and Isu2 proteins, Isa proteins are crucial for the in vivo function of biotin synthase but not for the de novo synthesis of its Fe/S clusters.
Na2S
-
-
Na2S
-
required for formation of mixed [Fe-S] cluster state
Na2S
-
enhances activity 3-4fold at 1 mM
S2-
-
enhances activity
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Cd2+
-
1 mM, almost complete inhibition
Co2+
-
1 mM, almost complete inhibition
Cu2+
-
1 mM, almost complete inhibition
Hg2+
-
1 mM, almost complete inhibition
L-methionine
-
product inhibition. The combination of both products in equimolar concentrations results in more than simple additive inhibition, suggesting that they bind cooperatively to the enzyme.
NaBH4
-
decreases cysteine desulfurase and biotin synthase activity
S-(5'-adenosyl)-L-cysteine
competitive
S-(5'-adenosyl)-L-homocysteine
competitive
S-adenosyl-L-homocysteine
-
potent inhibitor
Zn2+
-
1 mM, almost complete inhibition
5'-deoxyadenosine
-
strong inhibitor, reversible, 90% inhibition upon addition of 1 equivalent of 5'-deoxyadenosine with regard to the enzyme
5'-deoxyadenosine
-
product inhibition. The combination of both products in equimolar concentrations results in more than simple additive inhibition, suggesting that they bind cooperatively to the enzyme.
5'-deoxyadenosine
competitive, inhibits the growth of Mycobacterium tuberculosis H37Ra with an MIC of 392.6 microg/ml
acidomycin
-
structural analog of biotin, complete inhibition at 0.4 mM, 50% inhibition at 0.035 mM
acidomycin
acidomycin inhibits biotin synthesis through the competitive inhibition of biotin synthase BioB and also stimulates unproductive cleavage of S-adenosyl-L-methionine to generate the toxic metabolite 5'-deoxyadenosine. Acidomycin selectively accumulates in Mycobycterium tuberculosis. The development of spontaneous resistance by Mycobacterium tuberculosis to acidomycin is difficult, and only low-level resistance to acidomycin is observed by overexpression of BioB
additional information
-
not inhibitory: pyridoxal 5-phosphate, deoxyadenosine
-
additional information
-
5'-methylthioadenosine is not an inhibitor. Neither biotin nor iminobiotin is a significant inhibitor
-
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amino acid
-
one of the amino acids: Asn, Asp, Gln or Ser
D-fructose 1,6-bisphosphate
-
enhances biotin formation
fructose 1,6-diphosphate
-
-
MioC
-
essential, may function as an electron transport protein
-
NifS
-
a member of the Nif protein family stimulates biotin production
-
NifU
-
a member of the Nif protein family stimulates biotin production
-
Pyridine nucleotide
-
required, NADPH being most effective
-
pyridoxal 5'-phosphate
-
required for cysteine desulfurase activity of the enzyme
thiamine diphosphate-dependent protein
-
required
-
dithiothreitol
-
required
dithiothreitol
-
10fold stimulation of cysteine desulfurase activity of the enzyme at 20 mM
dithiothreitol
-
required for formation of mixed [Fe-S] cluster state
dithiothreitol
-
potential sulfur donor
flavodoxin reductase
-
-
-
flavodoxin reductase
-
omission results in a 100fold decrease in activity
-
L-cysteine
-
highly stimulates
L-cysteine
-
required as sulfur donor
L-cysteine
-
increases biotin production
S-adenosyl-L-methionine
-
required
S-adenosyl-L-methionine
-
required
S-adenosyl-L-methionine
-
-
S-adenosyl-L-methionine
-
required
S-adenosyl-L-methionine
-
two molecules of S-adenosyl-L-methionine are used to synthesize one molecule of biotin, one from dethiobiotin to the intermediate, and a second from the intermediate to biotin
S-adenosyl-L-methionine
-
one molecule S-adenosyl-L-methionine is required to form one molecule of biotin
S-adenosyl-L-methionine
-
-
S-adenosyl-L-methionine
-
absolute requirement as electron source
additional information
-
one or more unidentified factors from mitochoncrial matrix of pea and potato and from mitochondrial membranes of pea, in addition to the purified enzyme, are obligatory for the conversion of dithiobiotin to biotin in plants
-
additional information
-
a labile low-molecular-weight product of the 7,8-diaminoperlargonic acid aminotransferase reaction stimulates by 3fold
-
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