Crystallization and preliminary crystallographic analysis of gallate dioxygenase DesB from Sphingobium sp. SYK-6

Sugimoto, K.; Yamamoto, Y.; Antoni, S.; Senda, M.; Kasai, D.; Masai, E.; Fukuda, M.; Senda, T.; Acta Crystallogr. Sect. F F65, 1171-1174 (2009)

Data extracted from this reference:

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

Substrate Product ID

gallate + O2

-

713675

Sphingobium sp.

4-oxalomesaconate

-

-

-

?

Substrates

Commentary Substrates

Literature (Substrates)

Organism

Products

Commentary (Products)

Literature (Products)

Organism (Products)

Reversibility

ID

gallate + O2

-

713675

Sphingobium sp.

4-oxalomesaconate

-

-

-

?

No.

1st author

Pub Med

title

organims

journal

volume

pages

year

Activating Compound

Application

Cloned(Commentary)

Crystallization (Commentary)

Engineering

General Stability

Inhibitors

KM Value [mM]

Localization

Metals/Ions

Molecular Weight [Da]

Natural Substrates/ Products (Substrates)

Organic Solvent Stability

Organism

Oxidation Stability

Posttranslational Modification

Purification (Commentary)

Reaction

Renatured (Commentary)

Source Tissue

Specific Activity [micromol/min/mg]

Storage Stability

Substrates and Products (Substrate)

Subunits

Synonyms

Temperature Optimum [°C]

Temperature Range [°C]

Temperature Stability [°C]

Turnover Number [1/s]

pH Optimum

pH Range

pH Stability

Cofactor

Ki Value [mM]

pI Value

IC50 Value

Activating Compound (protein specific)

Application (protein specific)

Cloned(Commentary) (protein specific)

Cofactor (protein specific)

Crystallization (Commentary) (protein specific)

Engineering (protein specific)

General Stability (protein specific)

IC50 Value (protein specific)

Inhibitors (protein specific)

Ki Value [mM] (protein specific)

KM Value [mM] (protein specific)

Localization (protein specific)

Metals/Ions (protein specific)

Molecular Weight [Da] (protein specific)

Natural Substrates/ Products (Substrates) (protein specific)

Organic Solvent Stability (protein specific)

Oxidation Stability (protein specific)

Posttranslational Modification (protein specific)

Purification (Commentary) (protein specific)

Renatured (Commentary) (protein specific)

Source Tissue (protein specific)

Specific Activity [micromol/min/mg] (protein specific)

Storage Stability (protein specific)

Substrates and Products (Substrate) (protein specific)

Subunits (protein specific)

Temperature Optimum [°C] (protein specific)

Temperature Range [°C] (protein specific)

Temperature Stability [°C] (protein specific)

Turnover Number [1/s] (protein specific)

pH Optimum (protein specific)

pH Range (protein specific)

pH Stability (protein specific)

pI Value (protein specific)

Expression

General Information

General Information (protein specific)

Expression (protein specific)

KCat/KM [mM/s]

KCat/KM [mM/s] (protein specific)

746263

Sugimoto

Molecular mechanism of strict ...

Sphingobium sp. SYK-6

PLoS ONE

9

e92249

2014

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1

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1

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1

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-

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1

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1

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1

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1

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-

-

-

-

716261

Nogales

Unravelling the gallic acid de ...

Pseudomonas putida, Pseudomonas putida KT 2240

Mol. Microbiol.

79

359-374

2011

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-

1

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-

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-

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1

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42

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2

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2

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1

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-

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-

713675

Sugimoto

Crystallization and preliminar ...

Sphingobium sp.

Acta Crystallogr. Sect. F

F65

1171-1174

2009

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-

1

1

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1

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715355

Kasai

Characterization of the gallat ...

Sphingomonas paucimobilis, Sphingomonas paucimobilis SYK-6

J. Bacteriol.

187

5067-5074

2005

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-

1

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1

1

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1

3

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4

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1

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6

1

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6

1

1

1

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1

1

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1

1

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-

-

715480

Nogales

Molecular characterization of ...

Pseudomonas putida, Pseudomonas putida KT 2240

J. Biol. Chem.

280

35382-35390

2005

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1

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-

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3

1

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1

3

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45

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1

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2

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4

1

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1

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