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Literature summary for 1.14.13.107 extracted from

  • van der Werf, M.J.; Swarts, H.J.; de Bont, J.A.
    Rhodococcus erythropolis DCL14 contains a novel degradation pathway for limonene (1999), Appl. Environ. Microbiol., 65, 2092-2102.
    View publication on PubMedView publication on EuropePMC

Activating Compound

Activating Compound Comment Organism Structure
additional information induction by limonene Rhodococcus erythropolis

Localization

Localization Comment Organism GeneOntology No. Textmining
soluble
-
Rhodococcus erythropolis
-
-

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
(4R)-limonene + NADH + H+ + O2 Rhodococcus erythropolis a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4R)-limonene + NADH + H+ + O2 Rhodococcus erythropolis DCL14 a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4S)-limonene + NADH + H+ + O2 Rhodococcus erythropolis a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4S)-limonene + NADH + H+ + O2 Rhodococcus erythropolis DCL14 a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
additional information Rhodococcus erythropolis strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source ?
-
?
additional information Rhodococcus erythropolis DCL14 strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source ?
-
?

Organism

Organism UniProt Comment Textmining
Rhodococcus erythropolis Q9EUT9 isolated from a freshwater sediment sample
-
Rhodococcus erythropolis DCL14 Q9EUT9 isolated from a freshwater sediment sample
-

Source Tissue

Source Tissue Comment Organism Textmining
cell culture temperatures greater than 30°C inhibit growth completely. Growth rates on different substrates, overview Rhodococcus erythropolis
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
(4R)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4R)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4R)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1S,2S,4R)-Limonene-1,2-diol, (1S,4R)-1-hydroxy-2-oxolimonene, and (3R)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4R)-limonene degradation pathway, , metabolite identification by mass spectrometry Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4R)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4S)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4S)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4S)-limonene + NADH + H+ + O2 a step in the limonene degradation pathway. (1R,2R,4S)-Limonene-1,2-diol, (1R,4S)-1-hydroxy-2-oxolimonene, and (3S)-3-isopropenyl-6-oxoheptanoate are intermediates in the (4S)-limonene degradation pathway, metabolite identification by mass spectrometry Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
(4S)-limonene + NADH + H+ + O2 oxygen-dependent reaction Rhodococcus erythropolis DCL14 1,2-epoxymenth-8-ene + NAD+ + H2O
-
?
additional information strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source Rhodococcus erythropolis ?
-
?
additional information strain DCL14 is able to grow on limonene as a sole source of carbon and energy, but also assimilates the terpenes limonene-1,2-epoxide, limonene-1,2-diol, carveol, carvone, and (-)-menthol, while perillyl alcohol is not utilized as a carbon and energy source Rhodococcus erythropolis DCL14 ?
-
?

Temperature Optimum [°C]

Temperature Optimum [°C] Temperature Optimum Maximum [°C] Comment Organism
30
-
assay at Rhodococcus erythropolis

pH Optimum

pH Optimum Minimum pH Optimum Maximum Comment Organism
7
-
assay at Rhodococcus erythropolis

Cofactor

Cofactor Comment Organism Structure
FAD dependent on Rhodococcus erythropolis
additional information the enzyme is no cytochrome P-450-enzyme Rhodococcus erythropolis
NADH dependent on Rhodococcus erythropolis