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Literature summary for 2.7.7.48 extracted from

  • Guo, X.; Zhang, Z.; Gerstein, M.B.; Zheng, D.
    Small RNAs originated from pseudogenes: cis- or trans-acting? (2009), PLoS Comput. Biol., 5, e1000449.
    View publication on PubMedView publication on EuropePMC
Search for more literature for 2.7.7.48

Cloned(Commentary)

Cloned (Comment) Organism
identification and genomic analysis of 11956 non-transposon-related rice pseudogenes, most of which are from gene duplications, 145 of these pseudogenes potentially give rise to antisense small RNAs. 50% of these antisense RNAs are 24-nucleotides long, a feature often seen in plant repeat-associated small interfering RNAs produced by RNA-dependent RNA polymerase and Dicer-like protein 3 Oryza sativa

Inhibitors

Inhibitors Comment Organism Structure
additional information some pseudogene-derived siRNAs may be implicated in repressing pseudogene transcription involving RDR2 Oryza sativa

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
additional information Oryza sativa pseudogene-derived antisense siRNAs can be produced in specific rice developmental stages or physiological growth conditions, suggesting their potentially important roles in normal rice development involving RDR2, or small RNAs from rice pseudogenes might also function as natural antisense siRNAs either by interacting with the complementary sense RNAs from functional parental genes or by forming double-strand RNAs with transcripts of adjacent paralogous pseudogenes, function classification of rice pseudogenes, overview ?
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Organism

Organism UniProt Comment Textmining
Oryza sativa
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 149 pseudogenes
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Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
additional information pseudogene-derived antisense siRNAs can be produced in specific rice developmental stages or physiological growth conditions, suggesting their potentially important roles in normal rice development involving RDR2, or small RNAs from rice pseudogenes might also function as natural antisense siRNAs either by interacting with the complementary sense RNAs from functional parental genes or by forming double-strand RNAs with transcripts of adjacent paralogous pseudogenes, function classification of rice pseudogenes, overview Oryza sativa ?
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Synonyms

Synonyms Comment Organism
RDR2
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 Oryza sativa
RNA-dependent RNA polymerase
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 Oryza sativa