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Literature summary for 6.3.4.14 extracted from

  • Auguet, J.C.; Borrego, C.M.; Baneras, L.; Casamayor, E.O.
    Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark (2008), Environ. Microbiol., 10, 2527-2536.
    View publication on PubMed

Cloned(Commentary)

Cloned (Comment) Organism
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Chlorobium limicola
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Sulfurisphaera tokodaii
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Cupriavidus metallidurans
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Cytophaga hutchinsonii
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Metallosphaera sedula
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Sulfuracidifex metallicus
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Chlorobium phaeobacteroides
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Methanosarcinales
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Synechococcus sp.
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Pelobacter propionicus
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview uncultured bacterium
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Maribacter sp. HTCC2170
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Polynucleobacter asymbioticus QLW-P1DMWA-1
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Polaromonas sp.
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Chloroflexus aurantiacus
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Hyperthermus butylicus
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Natronomonas pharaonis
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Halobacterium salinarum
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Nitrosopumilus maritimus
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Saccharolobus solfataricus
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Acidianus brierleyi
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Trichodesmium erythraeum
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Geotalea uraniireducens
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Syntrophotalea carbinolica
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Cenarchaeum symbiosum
gene accC, DNA and amino acid sequence determination, analysis, and comparison, phylogenetic analysis, and denaturing gradient gel electrophoresis genetic fingerprinting method development and evaluation, overview Methanococcales

Metals/Ions

Metals/Ions Comment Organism Structure
Mg2+
-
Chlorobium limicola
Mg2+
-
Sulfurisphaera tokodaii
Mg2+
-
Cupriavidus metallidurans
Mg2+
-
Cytophaga hutchinsonii
Mg2+
-
Metallosphaera sedula
Mg2+
-
Sulfuracidifex metallicus
Mg2+
-
Chlorobium phaeobacteroides
Mg2+
-
Methanosarcinales
Mg2+
-
Synechococcus sp.
Mg2+
-
Pelobacter propionicus
Mg2+
-
uncultured bacterium
Mg2+
-
Maribacter sp. HTCC2170
Mg2+
-
Polynucleobacter asymbioticus QLW-P1DMWA-1
Mg2+
-
Polaromonas sp.
Mg2+
-
Chloroflexus aurantiacus
Mg2+
-
Hyperthermus butylicus
Mg2+
-
Natronomonas pharaonis
Mg2+
-
Halobacterium salinarum
Mg2+
-
Nitrosopumilus maritimus
Mg2+
-
Saccharolobus solfataricus
Mg2+
-
Acidianus brierleyi
Mg2+
-
Trichodesmium erythraeum
Mg2+
-
Geotalea uraniireducens
Mg2+
-
Syntrophotalea carbinolica
Mg2+
-
Cenarchaeum symbiosum
Mg2+
-
Methanococcales

Natural Substrates/ Products (Substrates)

Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
ATP + biotin-carboxyl-carrier protein + CO2 Chlorobium limicola
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Sulfurisphaera tokodaii
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Cupriavidus metallidurans
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Cytophaga hutchinsonii
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Metallosphaera sedula
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Sulfuracidifex metallicus
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Chlorobium phaeobacteroides
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Methanosarcinales
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Synechococcus sp.
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Pelobacter propionicus
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 uncultured bacterium
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Maribacter sp. HTCC2170
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Polynucleobacter asymbioticus QLW-P1DMWA-1
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Polaromonas sp.
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Chloroflexus aurantiacus
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Hyperthermus butylicus
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Natronomonas pharaonis
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Halobacterium salinarum
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Nitrosopumilus maritimus
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Saccharolobus solfataricus
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Acidianus brierleyi
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Trichodesmium erythraeum
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Geotalea uraniireducens
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Syntrophotalea carbinolica
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Cenarchaeum symbiosum
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2 Methanococcales
-
ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?

Organism

Organism UniProt Comment Textmining
Acidianus brierleyi Q877I5 gene accC
-
Cenarchaeum symbiosum A0RY62 gene accC
-
Chlorobium limicola
-
gene accC
-
Chlorobium phaeobacteroides
-
gene accC
-
Chloroflexus aurantiacus A9W9X0 gene accC
-
Cupriavidus metallidurans
-
gene accC
-
Cytophaga hutchinsonii
-
gene accC
-
Geotalea uraniireducens A5G5L1 gene accC
-
Halobacterium salinarum Q9HPP8 i.e. Halobacterium halobium, gene accC
-
Hyperthermus butylicus A2BLY3 strain DSM 5456/JCM 9403; gene accC
-
Maribacter sp. HTCC2170 A4APF1 gene accC
-
Metallosphaera sedula Q8J2Z4 gene accC
-
Methanococcales
-
gene accC
-
Methanosarcinales
-
gene accC
-
Natronomonas pharaonis A0A1U7EYC1 strain DSM 2160/ATCC 35678; gene accC
-
Nitrosopumilus maritimus A9A3E8 gene accC
-
Pelobacter propionicus A1ANN6 gene accC
-
Polaromonas sp. Q12EJ0 strain JS666/ATCC BAA-500; gene accC
-
Polynucleobacter asymbioticus QLW-P1DMWA-1 A4SVB6 strain QLW-P1DMWA-1; gene accC
-
Saccharolobus solfataricus Q97V46 gene accC
-
Sulfuracidifex metallicus O52602 gene accC
-
Sulfurisphaera tokodaii
-
gene accC
-
Synechococcus sp. Q54755 gene accC
-
Syntrophotalea carbinolica Q3A2P1 gene accC
-
Trichodesmium erythraeum Q10YA8 gene accC
-
uncultured bacterium B1GX36 gene accC
-

Substrates and Products (Substrate)

Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
ATP + biotin-carboxyl-carrier protein + CO2
-
Chlorobium limicola ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Sulfurisphaera tokodaii ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Cupriavidus metallidurans ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Cytophaga hutchinsonii ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Metallosphaera sedula ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Sulfuracidifex metallicus ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Chlorobium phaeobacteroides ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Methanosarcinales ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Synechococcus sp. ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Pelobacter propionicus ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
uncultured bacterium ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Maribacter sp. HTCC2170 ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Polynucleobacter asymbioticus QLW-P1DMWA-1 ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Polaromonas sp. ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Chloroflexus aurantiacus ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Hyperthermus butylicus ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Natronomonas pharaonis ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Halobacterium salinarum ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Nitrosopumilus maritimus ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Saccharolobus solfataricus ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Acidianus brierleyi ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Trichodesmium erythraeum ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Geotalea uraniireducens ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Syntrophotalea carbinolica ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Cenarchaeum symbiosum ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
ATP + biotin-carboxyl-carrier protein + CO2
-
Methanococcales ADP + phosphate + carboxybiotin-carboxyl-carrier protein
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Chlorobium limicola ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Sulfurisphaera tokodaii ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Cupriavidus metallidurans ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Cytophaga hutchinsonii ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Metallosphaera sedula ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Sulfuracidifex metallicus ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Chlorobium phaeobacteroides ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Methanosarcinales ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Synechococcus sp. ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Pelobacter propionicus ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase uncultured bacterium ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Maribacter sp. HTCC2170 ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Polynucleobacter asymbioticus QLW-P1DMWA-1 ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Polaromonas sp. ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Chloroflexus aurantiacus ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Hyperthermus butylicus ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Natronomonas pharaonis ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Halobacterium salinarum ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Nitrosopumilus maritimus ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Saccharolobus solfataricus ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Acidianus brierleyi ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Trichodesmium erythraeum ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Geotalea uraniireducens ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Syntrophotalea carbinolica ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Cenarchaeum symbiosum ?
-
?
additional information the biotin carboxylase is a subunit of the acetyl CoA carboxylase, ACCase Methanococcales ?
-
?

Synonyms

Synonyms Comment Organism
biotin carboxylase
-
Chlorobium limicola
biotin carboxylase
-
Sulfurisphaera tokodaii
biotin carboxylase
-
Cupriavidus metallidurans
biotin carboxylase
-
Cytophaga hutchinsonii
biotin carboxylase
-
Metallosphaera sedula
biotin carboxylase
-
Sulfuracidifex metallicus
biotin carboxylase
-
Chlorobium phaeobacteroides
biotin carboxylase
-
Methanosarcinales
biotin carboxylase
-
Synechococcus sp.
biotin carboxylase
-
Pelobacter propionicus
biotin carboxylase
-
uncultured bacterium
biotin carboxylase
-
Maribacter sp. HTCC2170
biotin carboxylase
-
Polynucleobacter asymbioticus QLW-P1DMWA-1
biotin carboxylase
-
Polaromonas sp.
biotin carboxylase
-
Chloroflexus aurantiacus
biotin carboxylase
-
Hyperthermus butylicus
biotin carboxylase
-
Natronomonas pharaonis
biotin carboxylase
-
Halobacterium salinarum
biotin carboxylase
-
Nitrosopumilus maritimus
biotin carboxylase
-
Saccharolobus solfataricus
biotin carboxylase
-
Acidianus brierleyi
biotin carboxylase
-
Trichodesmium erythraeum
biotin carboxylase
-
Geotalea uraniireducens
biotin carboxylase
-
Syntrophotalea carbinolica
biotin carboxylase
-
Cenarchaeum symbiosum
biotin carboxylase
-
Methanococcales

Cofactor

Cofactor Comment Organism Structure
ATP
-
Chlorobium limicola
ATP
-
Sulfurisphaera tokodaii
ATP
-
Cupriavidus metallidurans
ATP
-
Cytophaga hutchinsonii
ATP
-
Metallosphaera sedula
ATP
-
Sulfuracidifex metallicus
ATP
-
Chlorobium phaeobacteroides
ATP
-
Methanosarcinales
ATP
-
Synechococcus sp.
ATP
-
Pelobacter propionicus
ATP
-
uncultured bacterium
ATP
-
Maribacter sp. HTCC2170
ATP
-
Polynucleobacter asymbioticus QLW-P1DMWA-1
ATP
-
Polaromonas sp.
ATP
-
Chloroflexus aurantiacus
ATP
-
Hyperthermus butylicus
ATP
-
Natronomonas pharaonis
ATP
-
Halobacterium salinarum
ATP
-
Nitrosopumilus maritimus
ATP
-
Saccharolobus solfataricus
ATP
-
Acidianus brierleyi
ATP
-
Trichodesmium erythraeum
ATP
-
Geotalea uraniireducens
ATP
-
Syntrophotalea carbinolica
ATP
-
Cenarchaeum symbiosum
ATP
-
Methanococcales