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Literature summary extracted from
- Partial characterization of farnesyl and geranylgeranyl diphosphatases induced in rice seedlings by UV-C irradiation (2001), Plant Cell Physiol., 42, 864-867.
Activating Compound
| EC Number | Activating Compound | Comment | Organism | Structure |
|---|---|---|---|---|
| 3.1.7.1 | additional information | FDPase and GGDPase are induced in rice seedlings irradiated with UV-C | Oryza sativa |
Inhibitors
| EC Number | Inhibitors | Comment | Organism | Structure |
|---|---|---|---|---|
| 3.1.7.1 | farnesyl diphosphate | GGDPase activity, 0.1 mM, 50% inhibition | Oryza sativa |  |
| 3.1.7.1 | geranyl diphosphate | FDPase activity, 0.1 mM, 50% inhibition, no inhibition of GGDPase | Oryza sativa | |
| 3.1.7.1 | geranylgeranyl diphosphate | FDPase activity, 0.005 mM, 50% inhibition | Oryza sativa | |
| 3.1.7.1 | isopentenyl diphosphate | GGDPase activity, 0.05 mM, 50% inhibition | Oryza sativa | |
| 3.1.7.6 | geranyl diphosphate | - |
Oryza sativa | |
| 3.1.7.6 | geranylgeranyl diphosphate | - |
Oryza sativa | |
Localization
| EC Number | Localization | Comment | Organism | GeneOntology No. | Textmining |
|---|---|---|---|---|---|
| 3.1.7.1 | microsome | FDPase and GGDPase | Oryza sativa | - |
- |
| 3.1.7.1 | additional information | not in the cytoplasm | Oryza sativa | - |
- |
| 3.1.7.6 | microsome | - |
Oryza sativa | - |
- |
Metals/Ions
| EC Number | Metals/Ions | Comment | Organism | Structure |
|---|---|---|---|---|
| 3.1.7.1 | additional information | FDPase and GGDPase are both Mg2+-independent | Oryza sativa | |
| 3.1.7.6 | additional information | Mg2+-independent enzyme | Oryza sativa |
Natural Substrates/ Products (Substrates)
| EC Number | Natural Substrates | Organism | Comment (Nat. Sub.) | Natural Products | Comment (Nat. Pro.) | Rev. | Reac. |
|---|---|---|---|---|---|---|---|
| 3.1.7.1 | additional information | Oryza sativa | isoprenoid pathway, FDPase may play an important role in regulating the isoprenoid biosynthetic pathway in cells exposed to UV-C radiation | ? | - |
? | |
Organism
| EC Number | Organism | UniProt | Comment | Textmining |
|---|---|---|---|---|
| 3.1.7.1 | Oryza sativa | - |
cv. Nakdong | - |
| 3.1.7.6 | Oryza sativa | - |
cv. Nakdong | - |
Source Tissue
| EC Number | Source Tissue | Comment | Organism | Textmining |
|---|---|---|---|---|
| 3.1.7.1 | seedling | - |
Oryza sativa | - |
| 3.1.7.6 | seedling | - |
Oryza sativa | - |
Specific Activity [micromol/min/mg]
| EC Number | Specific Activity Minimum [µmol/min/mg] | Specific Activity Maximum [µmol/min/mg] | Comment | Organism |
|---|---|---|---|---|
| 3.1.7.1 | additional information | - |
the relative specific activity of FDPase is much higher than the specific activity of GGDPase | Oryza sativa |
Substrates and Products (Substrate)
| EC Number | Substrates | Comment Substrates | Organism | Products | Comment (Products) | Rev. | Reac. |
|---|---|---|---|---|---|---|---|
| 3.1.7.1 | farnesyl diphosphate + H2O | FDPase | Oryza sativa | farnesol + diphosphate | - |
? | |
| 3.1.7.1 | geranylgeranyl diphosphate + H2O | GGDPase | Oryza sativa | geranylgeraniol + diphosphate | - |
? | |
| 3.1.7.1 | additional information | isoprenoid pathway, FDPase may play an important role in regulating the isoprenoid biosynthetic pathway in cells exposed to UV-C radiation | Oryza sativa | ? | - |
? | |
| 3.1.7.6 | (2E,6E)-farnesyl diphosphate + H2O | - |
Oryza sativa | (2E,6E)-farnesol + diphosphate | diphosphate is not determined | ? | |
Synonyms
| EC Number | Synonyms | Comment | Organism |
|---|---|---|---|
| 3.1.7.1 | allyl diphosphatase | - |
Oryza sativa |
| 3.1.7.1 | farnesyl diphosphatase | - |
Oryza sativa |
| 3.1.7.1 | FDPase | - |
Oryza sativa |
| 3.1.7.1 | geranylgeranyl diphosphatase | - |
Oryza sativa |
| 3.1.7.1 | GGDPase | - |
Oryza sativa |
| 3.1.7.1 | More | FDPase and GGDPase are two distinct allyl diphosphatases specifically hydrolyzing farnesyl diphosphate and geranylgeranyl diphosphate, respectively | Oryza sativa |
| 3.1.7.6 | farnesyl diphosphatase | - |
Oryza sativa |
Temperature Optimum [°C]
| EC Number | Temperature Optimum [°C] | Temperature Optimum Maximum [°C] | Comment | Organism |
|---|---|---|---|---|
| 3.1.7.1 | 35 | - |
assay at | Oryza sativa |
pH Optimum
| EC Number | pH Optimum Minimum | pH Optimum Maximum | Comment | Organism |
|---|---|---|---|---|
| 3.1.7.1 | 6.8 | - |
FDPase | Oryza sativa |
| 3.1.7.1 | 7.9 | - |
GGDPase | Oryza sativa |
| 3.1.7.6 | 6.8 | - |
- |
Oryza sativa |
pH Range
| EC Number | pH Minimum | pH Maximum | Comment | Organism |
|---|---|---|---|---|
| 3.1.7.6 | 6.3 | 7 | pH 6.3: about 80% of maximal activity, pH 7.0: about about 70% of maximal activity | Oryza sativa |
Ki Value [mM]
| EC Number | Ki Value [mM] | Ki Value maximum [mM] | Inhibitor | Comment | Organism | Structure |
|---|---|---|---|---|---|---|
| 3.1.7.6 | 0.005 | - |
geranylgeranyl diphosphate | - |
Oryza sativa | |
| 3.1.7.6 | 0.1 | - |
geranyl diphosphate | - |
Oryza sativa | |
Expression
| EC Number | Organism | Comment | Expression |
|---|---|---|---|
| 3.1.7.6 | Oryza sativa | maximally induced 36 h after UV-C irradiation and decreased until 60 h | up |
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