SPARQL Endpoint
Knowledge Graph
A first prototype of a knowledge graph has been released and is now accessible through a newly established SPARQL endpoint: https://sparql.dsmz.de/brenda.
The graph is based on the DSMZ Digital Diversity Ontology (D3O) and currently supports integration efforts within the DSMZ Digital Diversity Hub.
It contains structured information on entities such as:
- Activator
- Cofactor
- Compound and CompoundStructure
- Enzyme (linked to UniProt)
- EnzymeClass
- Inhibitor
- Localization (linked to the Gene Ontology)
- LocalizationOccurrence
- Organism (linked to the NCBI Taxonomy and BacDive)
- Pathway
- Reaction
- Reference (linked to PubMed and EuropePMC)
- Tissue (linked to the BTO)
- TissueOccurrence
Both LocalizationOccurrence and TissueOccurrence include links to Reference, Enzyme, and Organism entities.
This initial release comprises a total of 10,798,737 RDF triples.
