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Information on Organism Agrobacterium tumefaciens

Synonyms:
"Achromobacter radiobacter" (Beijerinck and van Delden 1902) Bergey et al. 1934; Achromobacter radiobacter; Agrobacterium genomic group 4; Agrobacterium genomosp. 4; Agrobacterium genomovar 4; Agrobacterium genomovar G4; Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980) emend. Sawada et al. 1993; Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980) emend. Zhang et al. 2014; Agrobacterium radiobacter = Rhizobium radiobacter; Agrobacterium radiobacter; Agrobacterium sp. ISSDS-827; Agrobacterium tumefaciens; Agrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942 (Approved Lists 1980); Agrobacterium tumefaciens (TI PLASMID PTI15955); Agrobacterium tumefaciens (TI PLASMID PTIA6NC); Agrobacterium tumefaciens (TI PLASMID PTIACH5); Agrobacterium tumefaciens (Ti plasmid pTib6s3); Agrobacterium tumefaciens (TI PLASMID PTIBO542); Agrobacterium tumefaciens (TI PLASMID PTIC58); Agrobacterium tumefaciens (TI PLASMID PTIT37); Agrobacterium tumefaciens (TI PLASMID PTITM-4); "Alcaligenes radiobacter" (Beijerinck and van Delden 1902) Conn 1939; Alcaligenes radiobacter; ATCC 19358 [[Agrobacterium radiobacter]]; ATCC 19358 [[Rhizobium radiobacter]]; ATCC 23308; "Bacillus radiobacter" Beijerinck and van Delden 1902; Bacillus radiobacter; "Bacterium radiobacter" (Beijerinck and van Delden 1902) Lohnis 1905; Bacterium radiobacter; "Bacterium tumefaciens" Smith and Townsend 1907; Bacterium tumefaciens; CCUG 3354 [[Agrobacterium radiobacter]]; CFBP 2413; CIP 104325 [[Rhizobium radiobacter]]; DSM 30147 [[Agrobacterium radiobacter]]; DSM 30147 [[Rhizobium radiobacter]]; DSM 30205; HAMBI 1811; HAMBI 1814 [[Rhizobium radiobacter]]; IAM 12048 [[Agrobacterium radiobacter]]; IAM 12048; ICMP 5785 [[Rhizobium radiobacter]]; ICMP 5856; IFO 13532 [[Agrobacterium radiobacter]]; IFO 13532 [[Rhizobium radiobacter]]; JCM 20371 [[Rhizobium radiobacter]]; LMG 140 [[Rhizobium radiobacter]]; LMG:140 [[Rhizobium radiobacter]]; LMG 187; LMG:187; NBRC 13532 [[Agrobacterium radiobacter]]; NBRC 13532 [[Rhizobium radiobacter]]; NCCB 27005 [[Rhizobium radiobacter]]; NCIB 9042 [[Agrobacterium radiobacter]]; NCIB:9042 [[Agrobacterium radiobacter]]; NCIB 9042 [[Rhizobium radiobacter]]; NCIB:9042 [[Rhizobium radiobacter]]; NCIMB 9042 [[Rhizobium radiobacter]]; NCPPB 2437; NCPPB 3001 [[Rhizobium radiobacter]]; "Phytomonas tumefaciens" (Smith and Townsend 1907) Bergey et al. 1923; Phytomonas tumefaciens; "Polymonas tumefaciens" (Smith and Townsend 1907) Lieske 1928; Polymonas tumefaciens; "Pseudomonas radiobacter" (Beijerinck and van Delden 1902) Krasil'nikov 1949; Pseudomonas radiobacter; "Pseudomonas tumefaciens" (Smith and Townsend 1907) Duggar 1909; Pseudomonas tumefaciens; "Rhizobium radiobacter" (Beijerinck and van Delden 1902) Pribram 1933; Rhizobium radiobacter (Beijerinck and van Delden 1902) Young et al. 2001; Rhizobium radiobacter; Rhizobium sp. ISSDS-758; strain B6; Agrobacterium radiobacter (Beijerinck & van Delden 1902) Conn 1942 (Approved Lists) emend. Sawada et al. 1993; Agrobacterium radiobacter (Beijerinck & van Delden 1902) Conn 1942 (Approved Lists) emend. Zhang et al. 2013; Agrobacterium tumefacien; IAM 12048 [[Rhizobium radiobacter]]; Agrobacterium radiobacter (Beijerinck & van Delden 1902) Conn 1942 (Approved Lists) emend. Sawada et al. 1993 emend. Zhang et al. 2013; Agrobacterium radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980) emend. Zhang et al. 2013;
TaxTree of Organism Agrobacterium tumefaciens
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EC NUMBER
COMMENTARY hide
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(1,4)-beta-D-xylan degradation
-
-
PWY-6717
(3R)-linalool biosynthesis
-
-
PWY-7709
(3S)-linalool biosynthesis
-
-
PWY-7141
(4R)-carvone biosynthesis
-
-
PWY-5928
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)
-
-
PWY-7726
(5R)-carbapenem carboxylate biosynthesis
(5Z)-dodecenoate biosynthesis I
-
-
PWY0-862
(5Z)-dodecenoate biosynthesis II
-
-
PWY-7858
(8E,10E)-dodeca-8,10-dienol biosynthesis
-
-
PWY-7654
(9Z)-tricosene biosynthesis
-
-
PWY-7035
(aminomethyl)phosphonate degradation
-
-
PWY-7805
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
-
-
PWY-7216
(R)-cysteate degradation
-
-
PWY-6642
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
(S)-propane-1,2-diol degradation
-
-
PWY-7013
(S)-reticuline biosynthesis
-
-
(S)-reticuline biosynthesis I
-
-
PWY-3581
(S)-reticuline biosynthesis II
-
-
PWY-6133
(Z)-butanethial-S-oxide biosynthesis
-
-
PWY-6900
(Z)-phenylmethanethial S-oxide biosynthesis
-
-
PWY-6539
1,2-dichloroethane degradation
-
-
12DICHLORETHDEG-PWY
1,3-propanediol biosynthesis (engineered)
-
-
PWY-7385
1,5-anhydrofructose degradation
-
-
PWY-6992
1-butanol autotrophic biosynthesis (engineered)
-
-
PWY-6886
1-methylpyrrolinium biosynthesis
-
-
PWY-5315
10-cis-heptadecenoyl-CoA degradation (yeast)
-
-
PWY-7337
10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
-
-
PWY-7339
10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
-
-
PWY-7338
15-epi-lipoxin biosynthesis
-
-
PWY66-393
2'-deoxymugineic acid phytosiderophore biosynthesis
-
-
PWY-5912
2,3-dihydroxybenzoate biosynthesis
-
-
PWY-5901
2,3-trans-flavanols biosynthesis
-
-
PWY-6029
2-amino-3-hydroxycyclopent-2-enone biosynthesis
-
-
PWY-7536
2-arachidonoylglycerol biosynthesis
-
-
PWY-8052
2-carboxy-1,4-naphthoquinol biosynthesis
-
-
PWY-5837
2-chloroacrylate degradation I
-
-
PWY-7425
2-deoxy-D-glucose 6-phosphate degradation
-
-
PWY-8121
2-deoxy-D-ribose degradation II
-
-
PWY-8058
2-hydroxybiphenyl degradation
-
-
PWY-7008
2-methyl-branched fatty acid beta-oxidation
-
-
PWY-8181
2-methylpropene degradation
-
-
PWY-7778
2-nitrotoluene degradation
-
-
PWY-5641
24-epi-campesterol, fucosterol, and clionasterol biosynthesis (diatoms)
-
-
PWY-8238
3,4-dichlorobenzoate degradation
-
-
PWY-6217
3,5-dimethoxytoluene biosynthesis
-
-
PWY-7076
3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
-
-
CHLOROPHYLL-SYN
3,8-divinyl-chlorophyllide a biosynthesis II (anaerobic)
-
-
PWY-5531
3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent)
-
-
PWY-7159
3-(4-hydroxyphenyl)pyruvate biosynthesis
-
-
PWY-5886
3-chlorobenzoate degradation II (via protocatechuate)
-
-
PWY-6216
3-hydroxy-4-methyl-anthranilate biosynthesis I
-
-
PWY-7717
3-hydroxy-4-methyl-anthranilate biosynthesis II
-
-
PWY-7765
3-hydroxypropanoate cycle
-
-
PWY-5743
3-hydroxypropanoate/4-hydroxybutanate cycle
-
-
PWY-5789
3-methyl-branched fatty acid alpha-oxidation
-
-
PWY66-387
3-methylbutanol biosynthesis (engineered)
-
-
PWY-6871
3-oxoadipate degradation
-
-
PWY-2361
3-phenylpropanoate degradation
-
-
P281-PWY
4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis II
-
-
PWY-7282
4-aminobutanoate degradation I
-
-
PWY-6535
4-aminobutanoate degradation II
-
-
PWY-6537
4-aminobutanoate degradation III
-
-
PWY-6536
4-aminobutanoate degradation V
-
-
PWY-5022
4-chlorobenzoate degradation
-
-
PWY-6215
4-coumarate degradation (aerobic)
-
-
PWY-8002
4-coumarate degradation (anaerobic)
-
-
PWY-7046
4-ethylphenol degradation (anaerobic)
-
-
PWY-6080
4-hydroxy-2(1H)-quinolone biosynthesis
-
-
PWY-6661
4-hydroxy-2-nonenal detoxification
-
-
PWY-7112
4-hydroxybenzoate biosynthesis I (eukaryotes)
-
-
PWY-5754
4-hydroxybenzoate biosynthesis III (plants)
-
-
PWY-6435
4-hydroxymandelate degradation
4-methylcatechol degradation (ortho cleavage)
-
-
PWY-6185
4-methylphenol degradation to protocatechuate
-
-
PWY-7700
4-oxopentanoate degradation
-
-
PWY-7948
4-sulfocatechol degradation
-
-
PWY-6041
5-oxo-L-proline metabolism
-
-
PWY-7942
6-gingerol analog biosynthesis (engineered)
-
-
PWY-6920
8-amino-7-oxononanoate biosynthesis I
-
-
PWY-6519
8-amino-7-oxononanoate biosynthesis IV
-
-
PWY-8203
9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
-
-
PWY-7340
abscisic acid biosynthesis
-
-
PWY-695
acetaldehyde biosynthesis I
-
-
PWY-6333
acetaldehyde biosynthesis II
-
-
PWY-6330
acetate and ATP formation from acetyl-CoA I
-
-
PWY0-1312
acetate fermentation
-
-
acetoacetate degradation (to acetyl CoA)
-
-
ACETOACETATE-DEG-PWY
acetoin degradation
-
-
acetone degradation I (to methylglyoxal)
-
-
PWY-5451
acetone degradation III (to propane-1,2-diol)
-
-
PWY-7466
acetyl-CoA fermentation to butanoate
-
-
PWY-5676
acetylene degradation (anaerobic)
-
-
P161-PWY
acridone alkaloid biosynthesis
-
-
PWY-5958
acrylonitrile degradation I
-
-
PWY-7308
acylated cyanidin galactoside biosynthesis
-
-
PWY-7449
adenine salvage
-
-
PWY-6610
adenosine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7227
adenosine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7220
adenosine ribonucleotides de novo biosynthesis
-
-
PWY-7219
adipate degradation
-
-
PWY-8354
adlupulone and adhumulone biosynthesis
-
-
PWY-7857
aerobic respiration I (cytochrome c)
-
-
PWY-3781
aerobic respiration II (cytochrome c) (yeast)
-
-
PWY-7279
aerobic respiration III (alternative oxidase pathway)
-
-
PWY-4302
aerobic toluene degradation
-
-
Aflatoxin biosynthesis
-
-
ajmaline and sarpagine biosynthesis
-
-
PWY-5301
alanine metabolism
-
-
Alanine, aspartate and glutamate metabolism
-
-
aldoxime degradation
-
-
P345-PWY
alginate degradation
-
-
PWY-6986
alkane oxidation
-
-
PWY-2724
all-trans-decaprenyl diphosphate biosynthesis
-
-
PWY-5806
all-trans-farnesol biosynthesis
-
-
PWY-6859
allantoin degradation
-
-
allantoin degradation to ureidoglycolate I (urea producing)
-
-
PWY-5697
allantoin degradation to ureidoglycolate II (ammonia producing)
-
-
PWY-5698
alliin metabolism
-
-
PWY-5706
allopregnanolone biosynthesis
-
-
PWY-7455
alpha-diglucosyldiacylglycerol biosynthesis
-
-
PWY-7684
alpha-linolenate biosynthesis I (plants and red algae)
-
-
PWY-5997
alpha-linolenate metabolites biosynthesis
-
-
PWY-8398
alpha-Linolenic acid metabolism
-
-
alpha-tomatine degradation
-
-
PWY18C3-5
Amaryllidacea alkaloids biosynthesis
-
-
PWY-7826
Amino sugar and nucleotide sugar metabolism
-
-
Aminoacyl-tRNA biosynthesis
-
-
Aminobenzoate degradation
-
-
aminopropanol phosphate biosynthesis II
-
-
PWY-7378
aminopropylcadaverine biosynthesis
-
-
PWY0-1303
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
-
-
AMMASSIM-PWY
ammonia oxidation II (anaerobic)
-
-
P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
-
-
PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
-
-
PWY-7384
anandamide biosynthesis I
-
-
PWY-8051
anandamide biosynthesis II
-
-
PWY-8053
anandamide lipoxygenation
-
-
PWY-8056
androstenedione degradation I (aerobic)
-
-
PWY-6944
androstenedione degradation II (anaerobic)
-
-
PWY-8152
anteiso-branched-chain fatty acid biosynthesis
-
-
PWY-8173
anthocyanidin modification (Arabidopsis)
-
-
PWY-7450
anthocyanin biosynthesis
-
-
PWY-5125
Anthocyanin biosynthesis
-
-
anthocyanin biosynthesis (delphinidin 3-O-glucoside)
-
-
PWY-5153
anthocyanin biosynthesis (pelargonidin 3-O-glucoside)
-
-
PWY-7267
arachidonate biosynthesis
-
-
arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)
-
-
PWY-7601
arachidonate biosynthesis V (8-detaturase, mammals)
-
-
PWY-7725
arachidonate metabolites biosynthesis
-
-
PWY-8397
Arachidonic acid metabolism
-
-
arachidonic acid metabolism
-
-
Arginine and proline metabolism
-
-
Arginine biosynthesis
-
-
arginine dependent acid resistance
-
-
PWY0-1299
arginine metabolism
-
-
aromatic glucosinolate activation
-
-
PWY-6684
aromatic biogenic amine degradation (bacteria)
-
-
PWY-7431
aromatic polyketides biosynthesis
-
-
PWY-6316
arsenate detoxification I
-
-
PWY-8264
arsenate detoxification III
-
-
PWY-8263
arsenic detoxification (plants)
-
-
PWY-8259
arsenic detoxification (yeast)
-
-
PWY-4621
arsenite to oxygen electron transfer
-
-
PWY-4521
arsenite to oxygen electron transfer (via azurin)
-
-
PWY-7429
artemisinin and arteannuin B biosynthesis
-
-
PWY-5195
Ascorbate and aldarate metabolism
-
-
ascorbate metabolism
-
-
ascorbate recycling (cytosolic)
-
-
PWY-6370
aspartate and asparagine metabolism
-
-
aspirin triggered resolvin D biosynthesis
-
-
PWY66-395
aspirin triggered resolvin E biosynthesis
-
-
PWY66-394
assimilatory sulfate reduction I
-
-
SO4ASSIM-PWY
assimilatory sulfate reduction II
-
-
SULFMETII-PWY
assimilatory sulfate reduction III
-
-
PWY-6683
assimilatory sulfate reduction IV
-
-
PWY1ZNC-1
ATP biosynthesis
-
-
PWY-7980
Atrazine degradation
-
-
atrazine degradation I (aerobic)
-
-
P141-PWY
atrazine degradation III
-
-
PWY-5731
atromentin biosynthesis
-
-
PWY-7518
autoinducer AI-1 biosynthesis
-
-
PWY-6157
avenanthramide biosynthesis
-
-
PWY-8157
bacilysin biosynthesis
-
-
PWY-7626
backdoor pathway of androgen biosynthesis
-
-
PWY-8200
bacterial bioluminescence
-
-
PWY-7723
baicalein degradation (hydrogen peroxide detoxification)
-
-
PWY-7214
baicalein metabolism
-
-
PWY-7212
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
-
-
PWY-6443
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
-
-
PWY-6444
Benzoate degradation
-
-
benzoyl-CoA biosynthesis
-
-
PWY-6458
beta-(1,4)-mannan degradation
-
-
PWY-7456
beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
-
-
PWY-7586
beta-alanine biosynthesis I
-
-
PWY-3981
beta-alanine biosynthesis IV
-
-
PWY-5760
beta-Alanine metabolism
-
-
beta-carboline biosynthesis
-
-
PWY-5877
beta-D-glucuronide and D-glucuronate degradation
-
-
PWY-7247
Betalain biosynthesis
-
-
betanidin degradation
-
-
PWY-5461
betaxanthin biosynthesis
-
-
PWY-5426
betaxanthin biosynthesis (via dopamine)
-
-
PWY-5403
Bifidobacterium shunt
-
-
P124-PWY
bile acid biosynthesis, neutral pathway
biochanin A conjugates interconversion
-
-
PWY-2861
Biosynthesis of 12-, 14- and 16-membered macrolides
-
-
Biosynthesis of secondary metabolites
-
-
Biosynthesis of siderophore group nonribosomal peptides
-
-
Biosynthesis of unsaturated fatty acids
-
-
Biosynthesis of various secondary metabolites - part 1
-
-
Biosynthesis of various secondary metabolites - part 2
-
-
biotin biosynthesis
-
-
Biotin metabolism
-
-
biotin-carboxyl carrier protein assembly
-
-
PWY0-1264
biphenyl degradation
-
-
PWY5F9-12
bis(guanylyl molybdopterin) cofactor sulfurylation
-
-
PWY-8164
bisabolene biosynthesis (engineered)
-
-
PWY-7102
bisphenol A degradation
-
-
PWY-7757
bisucaberin biosynthesis
-
-
PWY-6381
brassicicene C biosynthesis
-
-
PWY-7517
Brassinosteroid biosynthesis
-
-
bryostatin biosynthesis
-
-
PWY-8047
bupropion degradation
-
-
PWY66-241
Butanoate metabolism
-
-
butanol and isobutanol biosynthesis (engineered)
-
-
PWY-7396
C4 and CAM-carbon fixation
-
-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
C5-Branched dibasic acid metabolism
-
-
cadaverine biosynthesis
-
-
PWY0-1601
caffeine biosynthesis I
-
-
PWY-5037
caffeine biosynthesis II (via paraxanthine)
-
-
PWY-5038
Caffeine metabolism
-
-
caffeoylglucarate biosynthesis
-
-
PWY-6673
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
camalexin biosynthesis
-
-
CAMALEXIN-SYN
canavanine degradation
-
-
PWY-31
Caprolactam degradation
-
-
capsaicin biosynthesis
-
-
PWY-5710
capsanthin and capsorubin biosynthesis
-
-
PWY-5174
capsiconiate biosynthesis
-
-
PWY-6027
Carbapenem biosynthesis
-
-
carbazole degradation
-
-
PWY-6550
Carbon fixation in photosynthetic organisms
-
-
Carbon fixation pathways in prokaryotes
-
-
carnitine metabolism
-
-
Carotenoid biosynthesis
-
-
carotenoid biosynthesis
-
-
catechol degradation to 2-hydroxypentadienoate I
-
-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
-
-
PWY-5419
catechol degradation to beta-ketoadipate
-
-
CATECHOL-ORTHO-CLEAVAGE-PWY
catecholamine biosynthesis
CDP-6-deoxy-D-gulose biosynthesis
-
-
PWY-8139
cellulose and hemicellulose degradation (cellulolosome)
-
-
PWY-6784
cellulose biosynthesis
-
-
PWY-1001
cellulose degradation
-
-
cellulose degradation II (fungi)
-
-
PWY-6788
ceramide and sphingolipid recycling and degradation (yeast)
-
-
PWY-7119
ceramide degradation by alpha-oxidation
-
-
PWY66-388
chitin biosynthesis
-
-
PWY-6981
chitin deacetylation
-
-
PWY-7118
chitin degradation I (archaea)
-
-
PWY-6855
chitin degradation II (Vibrio)
-
-
PWY-6902
chitin degradation III (Serratia)
-
-
PWY-7822
chitin derivatives degradation
-
-
PWY-6906
Chloroalkane and chloroalkene degradation
-
-
Chlorocyclohexane and chlorobenzene degradation
-
-
chlorogenic acid biosynthesis I
-
-
PWY-6039
chlorogenic acid degradation
-
-
PWY-6781
chlorophyll a degradation I
-
-
PWY-5098
chlorophyll a degradation II
-
-
PWY-6927
chlorophyll a degradation III
-
-
PWY-7164
chlorophyll metabolism
-
-
chlorpyrifos degradation
-
-
PWY-8065
cholesterol biosynthesis
-
-
cholesterol biosynthesis (algae, late side-chain reductase)
-
-
PWY-8191
cholesterol biosynthesis (diatoms)
-
-
PWY-8239
cholesterol biosynthesis (plants, early side-chain reductase)
-
-
PWY18C3-1
cholesterol biosynthesis II (via 24,25-dihydrolanosterol)
-
-
PWY66-3
cholesterol degradation to androstenedione I (cholesterol oxidase)
-
-
PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
-
-
PWY-6946
choline biosynthesis III
-
-
PWY-3561
choline degradation I
-
-
CHOLINE-BETAINE-ANA-PWY
choline degradation IV
-
-
PWY-7494
chorismate biosynthesis from 3-dehydroquinate
-
-
PWY-6163
chorismate metabolism
-
-
cinnamoyl-CoA biosynthesis
-
-
PWY-6457
cis-vaccenate biosynthesis
cis-zeatin biosynthesis
-
-
PWY-2781
Citrate cycle (TCA cycle)
-
-
citric acid cycle
-
-
CMP phosphorylation
-
-
PWY-7205
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis
-
-
PWY-7674
CO2 fixation in Crenarchaeota
-
-
CO2 fixation into oxaloacetate (anaplerotic)
-
-
PWYQT-4429
coenzyme B biosynthesis
-
-
P241-PWY
coenzyme M biosynthesis
-
-
coenzyme M biosynthesis II
-
-
PWY-6643
colupulone and cohumulone biosynthesis
-
-
PWY-5133
complex N-linked glycan biosynthesis (plants)
-
-
PWY-7920
coniferin metabolism
-
-
PWY-116
coumarin biosynthesis (via 2-coumarate)
-
-
PWY-5176
coumarins biosynthesis (engineered)
-
-
PWY-7398
creatine phosphate biosynthesis
-
-
PWY-6158
creatinine degradation
-
-
creatinine degradation II
-
-
PWY-4722
crotonate fermentation (to acetate and cyclohexane carboxylate)
-
-
PWY-7401
crotonyl-CoA/ethylmalonyl-CoA/hydroxybutyryl-CoA cycle (engineered)
-
-
PWY-7854
curcuminoid biosynthesis
-
-
PWY-6432
Cutin, suberine and wax biosynthesis
-
-
Cyanoamino acid metabolism
-
-
Cysteine and methionine metabolism
-
-
cysteine metabolism
-
-
cytidylyl molybdenum cofactor sulfurylation
-
-
PWY-8165
cytosolic NADPH production (yeast)
-
-
PWY-7268
D-Amino acid metabolism
-
-
D-apionate degradation I (xylose isomerase family decarboxylase)
-
-
PWY-8091
D-apionate degradation II (RLP decarboxylase)
-
-
PWY-8090
D-apionate degradation III (RLP transcarboxylase/hydrolase)
-
-
PWY-8092
D-apiose degradation II (to D-apionate)
-
-
PWY-8093
D-arabinose degradation II
-
-
DARABCATK12-PWY
D-carnitine degradation I
-
-
PWY-7471
D-galactarate degradation I
-
-
GALACTARDEG-PWY
D-galactarate degradation II
-
-
PWY-6497
D-galactosamine and N-acetyl-D-galactosamine degradation
-
-
PWY-7395
D-galactose degradation I (Leloir pathway)
-
-
PWY-6317
D-galactose degradation II
-
-
GALDEG-PWY
D-galacturonate degradation II
-
-
PWY-6486
D-galacturonate degradation III
-
-
PWY-8391
D-glucarate degradation I
-
-
GLUCARDEG-PWY
D-glucarate degradation II
-
-
PWY-6499
D-glucuronate degradation I
-
-
PWY-5525
D-glucuronate degradation II
-
-
PWY-6501
D-glucuronate degradation III
-
-
PWY-8390
D-malate degradation
-
-
PWY0-1465
d-mannose degradation
-
-
D-mannose degradation I
-
-
MANNCAT-PWY
D-mannose degradation II
-
-
PWY3O-1743
D-sorbitol biosynthesis I
-
-
PWY-5054
D-sorbitol degradation I
-
-
PWY-4101
D-sorbitol degradation II
-
-
SORBDEG-PWY
D-tagatose degradation
-
-
PWY-8324
d-xylose degradation
-
-
D-xylose degradation I
-
-
XYLCAT-PWY
D-xylose degradation IV
-
-
PWY-7294
D-xylose degradation to ethylene glycol (engineered)
-
-
PWY-7178
daidzein conjugates interconversion
-
-
PWY-2343
degradation of aromatic, nitrogen containing compounds
-
-
degradation of hexoses
-
-
degradation of pentoses
-
-
degradation of sugar acids
-
-
degradation of sugar alcohols
-
-
denitrification
-
-
desferrioxamine B biosynthesis
-
-
PWY-6376
desferrioxamine E biosynthesis
-
-
PWY-6375
detoxification of reactive carbonyls in chloroplasts
-
-
PWY-6786
di-homo-gamma-linolenate metabolites biosynthesis
-
-
PWY-8396
diacylglycerol and triacylglycerol biosynthesis
-
-
TRIGLSYN-PWY
diethylphosphate degradation
-
-
PWY-5491
dimethylsulfoniopropanoate biosynthesis I (Wollastonia)
-
-
PWY-6054
dimethylsulfoniopropanoate biosynthesis II (Spartina)
-
-
PWY-6055
Dioxin degradation
-
-
diphenyl ethers degradation
-
-
PWY-7747
dipicolinate biosynthesis
-
-
PWY-8088
dissimilatory sulfate reduction I (to hydrogen sufide))
-
-
DISSULFRED-PWY
Diterpenoid biosynthesis
-
-
divinyl ether biosynthesis II
-
-
PWY-5409
docosahexaenoate biosynthesis III (6-desaturase, mammals)
-
-
PWY-7606
docosahexaenoate metabolites biosynthesis
-
-
PWY-8400
dolichol and dolichyl phosphate biosynthesis
dopamine degradation
-
-
PWY6666-2
Drug metabolism - cytochrome P450
-
-
Drug metabolism - other enzymes
-
-
dTDP-beta-L-rhamnose biosynthesis
-
-
DTDPRHAMSYN-PWY
dTMP de novo biosynthesis (mitochondrial)
-
-
PWY66-385
dZTP biosynthesis
-
-
PWY-8289
echinatin biosynthesis
-
-
PWY-6325
enterobactin biosynthesis
-
-
Entner Doudoroff pathway
-
-
Entner-Doudoroff pathway I
-
-
PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
-
-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
Entner-Doudoroff shunt
-
-
ENTNER-DOUDOROFF-PWY
ephedrine biosynthesis
-
-
PWY-5883
ergosterol biosynthesis I
-
-
PWY-6075
ergosterol biosynthesis II
-
-
PWY-7154
ergothioneine biosynthesis I (bacteria)
-
-
PWY-7255
erythritol biosynthesis I
-
-
PWY-8372
erythritol biosynthesis II
-
-
PWY-8373
erythromycin D biosynthesis
-
-
PWY-7106
ethanol degradation I
-
-
ETOH-ACETYLCOA-ANA-PWY
ethanol degradation II
-
-
PWY66-21
ethanol degradation III
-
-
PWY66-161
ethanol degradation IV
-
-
PWY66-162
ethanol fermentation
-
-
ethanolamine utilization
-
-
PWY0-1477
ethene biosynthesis I (plants)
-
-
ETHYL-PWY
ethene biosynthesis II (microbes)
-
-
PWY-6853
ethene biosynthesis III (microbes)
-
-
PWY-6854
ethene biosynthesis V (engineered)
-
-
PWY-7124
Ether lipid metabolism
-
-
ethiin metabolism
-
-
PWY-5708
Ethylbenzene degradation
-
-
ethylbenzene degradation (anaerobic)
-
-
PWY-481
ethylene glycol degradation
-
-
PWY0-1280
ethylmalonyl-CoA pathway
-
-
PWY-5741
eumelanin biosynthesis
-
-
PWY-6498
even iso-branched-chain fatty acid biosynthesis
-
-
PWY-8175
fatty acid alpha-oxidation I (plants)
-
-
PWY-2501
fatty acid beta-oxidation I (generic)
-
-
FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
-
-
PWY-5136
fatty acid beta-oxidation VI (mammalian peroxisome)
-
-
PWY66-391
fatty acid beta-oxidation VII (yeast peroxisome)
-
-
PWY-7288
Fatty acid biosynthesis
-
-
fatty acid biosynthesis initiation (mitochondria)
-
-
PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
-
-
PWY-6799
fatty acid biosynthesis initiation (type I)
-
-
PWY-5966-1
fatty acid biosynthesis initiation (type II)
-
-
PWY-4381
Fatty acid degradation
-
-
Fatty acid elongation
-
-
fatty acid elongation -- saturated
-
-
FASYN-ELONG-PWY
fatty acid salvage
-
-
PWY-7094
Fe(II) oxidation
-
-
PWY-6692
FeMo cofactor biosynthesis
-
-
PWY-7710
fenchol biosynthesis II
-
-
PWY-6445
ferulate and sinapate biosynthesis
-
-
PWY-5168
firefly bioluminescence
-
-
PWY-7913
flavin biosynthesis
-
-
flavin biosynthesis I (bacteria and plants)
-
-
RIBOSYN2-PWY
flavin biosynthesis II (archaea)
-
-
PWY-6167
flavin biosynthesis III (fungi)
-
-
PWY-6168
Flavone and flavonol biosynthesis
-
-
flavonoid biosynthesis
-
-
PWY1F-FLAVSYN
Flavonoid biosynthesis
-
-
flavonoid biosynthesis (in equisetum)
-
-
PWY-6787
flavonoid di-C-glucosylation
-
-
PWY-7897
flavonol biosynthesis
-
-
PWY-3101
Fluorobenzoate degradation
-
-
Folate biosynthesis
-
-
folate transformations I
-
-
PWY-2201
folate transformations II (plants)
-
-
PWY-3841
folate transformations III (E. coli)
-
-
1CMET2-PWY
formaldehyde assimilation I (serine pathway)
-
-
PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
-
-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
-
-
P185-PWY
formaldehyde oxidation
-
-
formaldehyde oxidation I
-
-
RUMP-PWY
formaldehyde oxidation II (glutathione-dependent)
-
-
PWY-1801
formononetin conjugates interconversion
-
-
PWY-2904
free phenylpropanoid acid biosynthesis
-
-
PWY-2181
fructan degradation
-
-
PWY-862
Fructose and mannose metabolism
-
-
fusicoccin A biosynthesis
-
-
PWY-6659
GABA shunt I
-
-
GLUDEG-I-PWY
GABA shunt II
-
-
PWY-8346
galactitol degradation
-
-
GALACTITOLCAT-PWY
Galactose metabolism
-
-
gallate degradation
-
-
gallate degradation II
-
-
GALLATE-DEGRADATION-I-PWY
gallate degradation III (anaerobic)
-
-
P3-PWY
gamma-hexachlorocyclohexane degradation
-
-
GAMMAHEXCHLORDEG-PWY
gamma-linolenate biosynthesis II (animals)
-
-
PWY-6000
gamma-resorcylate degradation I
-
-
PWY-7773
gamma-resorcylate degradation II
-
-
PWY-7772
ganglio-series glycosphingolipids biosynthesis
-
-
PWY-7836
GDP-alpha-D-glucose biosynthesis
-
-
PWY-5661
GDP-mannose biosynthesis
-
-
PWY-5659
genistein conjugates interconversion
-
-
PWY-2345
Geraniol degradation
-
-
geranyl diphosphate biosynthesis
-
-
PWY-5122
geranylgeranyl diphosphate biosynthesis
-
-
PWY-5120
gibberellin inactivation I (2beta-hydroxylation)
-
-
PWY-102
ginsenoside metabolism
-
-
ginsenosides biosynthesis
-
-
PWY-5672
gliotoxin biosynthesis
-
-
PWY-7533
globo-series glycosphingolipids biosynthesis
-
-
PWY-7838
gluconeogenesis
-
-
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
-
-
PWY-6142
gluconeogenesis III
-
-
PWY66-399
glucose and glucose-1-phosphate degradation
-
-
GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
-
-
DHGLUCONATE-PYR-CAT-PWY
glucosinolate activation
-
-
PWY-5267
glucosinolate biosynthesis from dihomomethionine
-
-
PWYQT-4471
glucosinolate biosynthesis from hexahomomethionine
-
-
PWYQT-4475
glucosinolate biosynthesis from homomethionine
-
-
PWY-1187
glucosinolate biosynthesis from pentahomomethionine
-
-
PWYQT-4474
glucosinolate biosynthesis from phenylalanine
-
-
PWY-2821
glucosinolate biosynthesis from tetrahomomethionine
-
-
PWYQT-4473
glucosinolate biosynthesis from trihomomethionine
-
-
PWYQT-4472
glucosinolate biosynthesis from tryptophan
-
-
PWY-601
glucosinolate biosynthesis from tyrosine
-
-
PWY-7901
glucosylglycerol biosynthesis
-
-
PWY-7902
glutamate and glutamine metabolism
-
-
glutamate removal from folates
-
-
PWY-2161B
glutaryl-CoA degradation
-
-
PWY-5177
glutathione biosynthesis
-
-
GLUTATHIONESYN-PWY
Glutathione metabolism
-
-
glutathione metabolism
-
-
glutathione-mediated detoxification I
-
-
PWY-4061
glutathione-mediated detoxification II
-
-
PWY-6842
glutathione-peroxide redox reactions
-
-
PWY-4081
glycerol degradation to butanol
-
-
PWY-7003
glycerol-3-phosphate to fumarate electron transfer
-
-
PWY0-1582
Glycerolipid metabolism
-
-
glycerophosphodiester degradation
-
-
PWY-6952
Glycerophospholipid metabolism
-
-
glycine betaine biosynthesis
-
-
glycine betaine biosynthesis I (Gram-negative bacteria)
-
-
BETSYN-PWY
glycine betaine biosynthesis II (Gram-positive bacteria)
-
-
PWY-3722
glycine betaine biosynthesis III (plants)
-
-
PWY1F-353
glycine biosynthesis II
-
-
GLYCINE-SYN2-PWY
glycine cleavage
-
-
GLYCLEAV-PWY
glycine degradation (reductive Stickland reaction)
-
-
PWY-8015
glycine metabolism
-
-
Glycine, serine and threonine metabolism
-
-
glycogen biosynthesis
-
-
glycogen biosynthesis I (from ADP-D-Glucose)
-
-
GLYCOGENSYNTH-PWY
glycogen biosynthesis II (from UDP-D-Glucose)
-
-
PWY-5067
glycogen biosynthesis III (from alpha-maltose 1-phosphate)
-
-
PWY-7900
glycogen degradation I
-
-
GLYCOCAT-PWY
glycogen degradation II
-
-
PWY-5941
glycogen metabolism
-
-
glycolate and glyoxylate degradation II
-
-
GLYOXDEG-PWY
glycolysis
-
-
Glycolysis / Gluconeogenesis
-
-
glycolysis I (from glucose 6-phosphate)
-
-
GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
-
-
PWY-5484
glycolysis III (from glucose)
-
-
ANAGLYCOLYSIS-PWY
glycolysis IV
-
-
PWY-1042
glycolysis V (Pyrococcus)
-
-
P341-PWY
Glycosaminoglycan degradation
-
-
Glycosphingolipid biosynthesis - ganglio series
-
-
Glycosphingolipid biosynthesis - globo and isoglobo series
-
-
Glyoxylate and dicarboxylate metabolism
-
-
glyoxylate cycle
-
-
GLYOXYLATE-BYPASS
glyphosate degradation II
-
-
PWY-7806
glyphosate degradation III
-
-
PWY-7807
gondoate biosynthesis (anaerobic)
-
-
PWY-7663
gossypol biosynthesis
-
-
PWY-5773
guaiacol biosynthesis
-
-
PWY18C3-23
guanosine deoxyribonucleotides de novo biosynthesis I
-
-
PWY-7226
guanosine deoxyribonucleotides de novo biosynthesis II
-
-
PWY-7222
guanosine ribonucleotides de novo biosynthesis
-
-
PWY-7221
heme b biosynthesis I (aerobic)
-
-
HEME-BIOSYNTHESIS-II
heme b biosynthesis II (oxygen-independent)
-
-
HEMESYN2-PWY
heme b biosynthesis V (aerobic)
-
-
HEME-BIOSYNTHESIS-II-1
heme degradation II
-
-
PWY-7845
heme metabolism
-
-
heterolactic fermentation
-
-
P122-PWY
histamine degradation
-
-
PWY-6181
Histidine metabolism
-
-
histidine metabolism
-
-
homocysteine and cysteine interconversion
-
-
PWY-801
homoglutathione biosynthesis
-
-
PWY-6840
homospermidine biosynthesis I
-
-
PWY-5907
homospermidine biosynthesis II
-
-
PWY-8149
hydrogen sulfide biosynthesis II (mammalian)
-
-
PWY66-426
hydrogen to fumarate electron transfer
-
-
PWY0-1576
hydroxycinnamic acid serotonin amides biosynthesis
-
-
PWY-5473
hydroxycinnamic acid tyramine amides biosynthesis
-
-
PWY-5474
hydroxylated fatty acid biosynthesis (plants)
-
-
PWY-6433
hyperforin and adhyperforin biosynthesis
-
-
PWY-5808
hypotaurine degradation
-
-
PWY-7387
IAA biosynthesis
-
-
icosapentaenoate biosynthesis II (6-desaturase, mammals)
-
-
PWY-7049
icosapentaenoate biosynthesis III (8-desaturase, mammals)
-
-
PWY-7724
icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)
-
-
PWY-7602
icosapentaenoate biosynthesis VI (fungi)
-
-
PWY-6940
icosapentaenoate metabolites biosynthesis
-
-
PWY-8399
incomplete reductive TCA cycle
-
-
P42-PWY
Indole alkaloid biosynthesis
-
-
indole glucosinolate activation (herbivore attack)
-
-
PWYQT-4476
indole glucosinolate activation (intact plant cell)
-
-
PWYQT-4477
indole-3-acetate biosynthesis II
-
-
PWY-581
indole-3-acetate biosynthesis III (bacteria)
-
-
PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
-
-
PWY-5025
indole-3-acetate biosynthesis VI (bacteria)
-
-
TRPIAACAT-PWY
inosine-5'-phosphate biosynthesis II
-
-
PWY-6124
inositol diphosphates biosynthesis
-
-
PWY-6369
Inositol phosphate metabolism
-
-
Insect hormone biosynthesis
-
-
inulin degradation
-
-
PWY-8314
ipsdienol biosynthesis
-
-
PWY-7410
Isoflavonoid biosynthesis
-
-
isoflavonoid biosynthesis I
-
-
PWY-2002
isoflavonoid biosynthesis II
-
-
PWY-2083
isoleucine metabolism
-
-
isoprene biosynthesis II (engineered)
-
-
PWY-7391
isoprenoid biosynthesis
-
-
isopropanol biosynthesis (engineered)
-
-
PWY-6876
Isoquinoline alkaloid biosynthesis
- <