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Information on Organism Bradyrhizobium diazoefficiens USDA 110

Synonyms:
Bradyrhizobium diazoefficiens USDA 110; Bradyrhizobium japonicum USDA 110; Bradyrhizobium japonicum USDA110; Bradyrhizobium japonicum str. USDA 110;
Word Map for Organism Bradyrhizobium diazoefficiens USDA 110
TaxTree of Organism Bradyrhizobium diazoefficiens USDA 110
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Alphaproteobacteria can be found in Brenda BRENDA pathways(class)
Hyphomicrobiales can be found in Brenda BRENDA pathways(order)
Bradyrhizobiaceae can be found in Brenda BRENDA pathways(family)
Bradyrhizobium can be found in Brenda BRENDA pathways(genus)
Bradyrhizobium diazoefficiens can be found in Brenda BRENDA pathways(species)
Bradyrhizobium diazoefficiens USDA 110 can be found in Brenda BRENDA pathways(strain)
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EC NUMBER
COMMENTARY hide
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(4Z,7Z,10Z,13Z,16Z)-docosapentaenoate biosynthesis (6-desaturase)
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-
PWY-7726
(8E,10E)-dodeca-8,10-dienol biosynthesis
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PWY-7654
(R)- and (S)-3-hydroxybutanoate biosynthesis (engineered)
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PWY-7216
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1,2-dichloroethane degradation
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12DICHLORETHDEG-PWY
1,5-anhydrofructose degradation
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-
PWY-6992
10-cis-heptadecenoyl-CoA degradation (yeast)
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PWY-7337
10-trans-heptadecenoyl-CoA degradation (MFE-dependent, yeast)
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PWY-7339
10-trans-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
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PWY-7338
2-deoxy-D-ribose degradation II
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PWY-8058
2-methyl-branched fatty acid beta-oxidation
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PWY-8181
2-methylpropene degradation
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PWY-7778
2-oxoglutarate decarboxylation to succinyl-CoA
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PWY-5084
3-hydroxypropanoate/4-hydroxybutanate cycle
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PWY-5789
3-phenylpropanoate degradation
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P281-PWY
4-ethylphenol degradation (anaerobic)
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PWY-6080
4-hydroxybenzoate biosynthesis III (plants)
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PWY-6435
4-hydroxymandelate degradation
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4-oxopentanoate degradation
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PWY-7948
4-sulfocatechol degradation
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PWY-6041
9-cis, 11-trans-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
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PWY-7340
acetoacetate degradation (to acetyl CoA)
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ACETOACETATE-DEG-PWY
acetone degradation I (to methylglyoxal)
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PWY-5451
acetone degradation III (to propane-1,2-diol)
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PWY-7466
acetyl-CoA fermentation to butanoate
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PWY-5676
acrylonitrile degradation I
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PWY-7308
acrylonitrile degradation II
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PWY-7309
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
aerobic toluene degradation
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alanine metabolism
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aldoxime degradation
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P345-PWY
alpha-amyrin biosynthesis
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PWY-5377
alpha-Linolenic acid metabolism
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Amaryllidacea alkaloids biosynthesis
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PWY-7826
Aminobenzoate degradation
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anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
anaerobic energy metabolism (invertebrates, mitochondrial)
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PWY-7384
anapleurotic synthesis of oxalacetate
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androstenedione degradation I (aerobic)
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PWY-6944
androstenedione degradation II (anaerobic)
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PWY-8152
arachidonate biosynthesis
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Arachidonic acid metabolism
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arachidonic acid metabolism
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Arginine and proline metabolism
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arginine metabolism
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arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
Ascorbate and aldarate metabolism
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ascorbate metabolism
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bacterial bioluminescence
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PWY-7723
benzoate biosynthesis I (CoA-dependent, beta-oxidative)
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PWY-6443
Benzoate degradation
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benzoyl-CoA biosynthesis
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PWY-6458
beta-Alanine metabolism
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Biosynthesis of secondary metabolites
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Biosynthesis of unsaturated fatty acids
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bupropion degradation
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PWY66-241
Butanoate metabolism
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
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PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Caffeine metabolism
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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carbon tetrachloride degradation II
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PWY-5372
chitin deacetylation
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PWY-7118
Chloroalkane and chloroalkene degradation
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Chlorocyclohexane and chlorobenzene degradation
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cholesterol degradation to androstenedione I (cholesterol oxidase)
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PWY-6945
cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
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PWY-6946
chorismate biosynthesis from 3-dehydroquinate
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PWY-6163
chorismate metabolism
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Citrate cycle (TCA cycle)
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citric acid cycle
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CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
crotonate fermentation (to acetate and cyclohexane carboxylate)
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PWY-7401
Cyanoamino acid metabolism
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Cysteine and methionine metabolism
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D-sorbitol degradation I
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PWY-4101
degradation of aromatic, nitrogen containing compounds
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degradation of sugar alcohols
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denitrification
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diploterol biosynthesis
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PWY-6098
docosahexaenoate biosynthesis III (6-desaturase, mammals)
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PWY-7606
Drug metabolism - cytochrome P450
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ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis V (engineered)
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PWY-7124
Ethylbenzene degradation
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ethylbenzene degradation (anaerobic)
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PWY-481
ethylmalonyl-CoA pathway
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PWY-5741
fatty acid beta-oxidation I (generic)
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FAO-PWY
fatty acid beta-oxidation II (plant peroxisome)
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PWY-5136
fatty acid beta-oxidation VI (mammalian peroxisome)
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PWY66-391
fatty acid beta-oxidation VII (yeast peroxisome)
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PWY-7288
Fatty acid biosynthesis
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fatty acid biosynthesis initiation (mitochondria)
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PWY66-429
fatty acid biosynthesis initiation (plant mitochondria)
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PWY-6799
Fatty acid degradation
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Fatty acid elongation
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fatty acid salvage
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PWY-7094
Fe(II) oxidation
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PWY-6692
Fluorobenzoate degradation
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formaldehyde assimilation I (serine pathway)
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PWY-1622
Fructose and mannose metabolism
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Galactose metabolism
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gallate degradation
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gamma-hexachlorocyclohexane degradation
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GAMMAHEXCHLORDEG-PWY
Geraniol degradation
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gluconeogenesis
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gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glutaryl-CoA degradation
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PWY-5177
Glutathione metabolism
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Glycerophospholipid metabolism
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Glycosaminoglycan degradation
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Glycosphingolipid biosynthesis - ganglio series
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Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
gossypol biosynthesis
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PWY-5773
hopanoid biosynthesis (bacteria)
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PWY-7072
hydrogen production VI
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PWY-6780
IAA biosynthesis
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incomplete reductive TCA cycle
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P42-PWY
indole glucosinolate activation (herbivore attack)
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PWYQT-4476
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
indole-3-acetate biosynthesis V (bacteria and fungi)
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PWY-5026
isoprene biosynthesis II (engineered)
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PWY-7391
isopropanol biosynthesis (engineered)
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PWY-6876
jasmonic acid biosynthesis
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PWY-735
justicidin B biosynthesis
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PWY-6824
ketogenesis
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PWY66-367
ketolysis
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PWY66-368
L-arginine degradation X (arginine monooxygenase pathway)
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ARGDEG-V-PWY
L-ascorbate degradation II (bacterial, aerobic)
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PWY-6961
L-ascorbate degradation III
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PWY-6960
L-carnitine degradation II
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PWY-3641
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-isoleucine degradation I
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ILEUDEG-PWY
L-lysine fermentation to acetate and butanoate
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P163-PWY
L-malate degradation II
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PWY-7686
Linoleic acid metabolism
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lipid metabolism
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Lysine degradation
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malate/L-aspartate shuttle pathway
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MALATE-ASPARTATE-SHUTTLE-PWY
mangrove triterpenoid biosynthesis
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PWY-6109
matairesinol biosynthesis
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PWY-5466
melatonin degradation I
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PWY-6398
Metabolic pathways
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metabolism of disaccharids
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Metabolism of xenobiotics by cytochrome P450
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-
Methane metabolism
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Methanobacterium thermoautotrophicum biosynthetic metabolism
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PWY-6146
methanogenesis from acetate
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METH-ACETATE-PWY
methanol oxidation to carbon dioxide
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PWY-7616
methanol oxidation to formaldehyde II
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PWY-6510
methyl tert-butyl ether degradation
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PWY-7779
methylaspartate cycle
mevalonate pathway I (eukaryotes and bacteria)
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-
PWY-922
mevalonate pathway II (haloarchaea)
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PWY-6174
mevalonate pathway III (Thermoplasma)
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PWY-7524
mevalonate pathway IV (archaea)
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PWY-8125
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
NAD phosphorylation and dephosphorylation
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NADPHOS-DEPHOS-PWY
NAD salvage pathway III (to nicotinamide riboside)
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NAD-BIOSYNTHESIS-II
NAD(P)/NADPH interconversion
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PWY-5083
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
nicotine degradation IV
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PWY66-201
nicotine degradation V
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PWY66-221
nitrate assimilation
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nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction IV (dissimilatory)
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PWY-5674
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction X (dissimilatory, periplasmic)
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PWY0-1584
nitrifier denitrification
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PWY-7084
nitrogen fixation I (ferredoxin)
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N2FIX-PWY
Nitrogen metabolism
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-
nitrogen remobilization from senescing leaves
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PWY-6549
Nitrotoluene degradation
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-
non-pathway related
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nucleoside and nucleotide degradation (archaea)
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PWY-5532
oleate beta-oxidation
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PWY0-1337
oleate biosynthesis I (plants)
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PWY-5147
Other glycan degradation
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Oxidative phosphorylation
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oxidative phosphorylation
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-
palmitoleate biosynthesis II (plants and bacteria)
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PWY-5366
Pantothenate and CoA biosynthesis
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pantothenate biosynthesis
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partial TCA cycle (obligate autotrophs)
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PWY-5913
pectin degradation II
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PWY-7248
Penicillin and cephalosporin biosynthesis
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-
pentacyclic triterpene biosynthesis
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PWY-7251
Pentose and glucuronate interconversions
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Peptidoglycan biosynthesis
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peptidoglycan biosynthesis
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peptidoglycan biosynthesis II (staphylococci)
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PWY-5265
peptidoglycan biosynthesis IV (Enterococcus faecium)
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-
PWY-6471
peptidoglycan maturation (meso-diaminopimelate containing)
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PWY0-1586
Phenylalanine metabolism
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-
Phenylalanine, tyrosine and tryptophan biosynthesis
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-
phosphatidylcholine biosynthesis V
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PWY-6825
phosphatidylcholine biosynthesis VI
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PWY-6826
phosphatidylethanolamine bioynthesis
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-
phosphopantothenate biosynthesis I
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-
PANTO-PWY
Photosynthesis
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-
photosynthesis
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-
photosynthesis light reactions
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PWY-101
platensimycin biosynthesis
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-
PWY-8179
Polycyclic aromatic hydrocarbon degradation
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polyhydroxybutanoate biosynthesis
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PWY1-3
polyhydroxydecanoate biosynthesis
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-
PWY-6657
propanoate fermentation to 2-methylbutanoate
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PWY-5109
protocatechuate degradation II (ortho-cleavage pathway)
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PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY
purine metabolism
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pyruvate fermentation to acetone
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PWY-6588
pyruvate fermentation to butanoate
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CENTFERM-PWY
pyruvate fermentation to butanol I
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PWY-6583
pyruvate fermentation to butanol II (engineered)
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PWY-6883
pyruvate fermentation to hexanol (engineered)
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PWY-6863
pyruvate fermentation to propanoate I
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P108-PWY
Pyruvate metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
reductive acetyl coenzyme A pathway
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-
reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
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CODH-PWY
reductive TCA cycle I
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P23-PWY
reductive TCA cycle II
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PWY-5392
retinoate biosynthesis I
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-
PWY-6872
Retinol metabolism
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ribitol degradation I
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-
RIBITOLUTIL-PWY
Rubisco shunt
-
-
PWY-5723
sesamin biosynthesis
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PWY-5469
Sesquiterpenoid and triterpenoid biosynthesis
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sitosterol degradation to androstenedione
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-
PWY-6948
Sphingolipid metabolism
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Starch and sucrose metabolism
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Steroid hormone biosynthesis
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-
Styrene degradation
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succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
sucrose degradation II (sucrose synthase)
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PWY-3801
superoxide radicals degradation
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-
DETOX1-PWY
superpathway of glyoxylate cycle and fatty acid degradation
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-
PWY-561
TCA cycle I (prokaryotic)
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-
TCA
TCA cycle II (plants and fungi)
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-
PWY-5690
TCA cycle III (animals)
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-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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-
P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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-
PWY-6969
TCA cycle VIII (Chlamydia)
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-
TCA-1
trehalose degradation II (cytosolic)
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PWY0-1182
trehalose degradation VI (periplasmic)
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-
PWY0-1466
Tryptophan metabolism
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-
Valine, leucine and isoleucine degradation
-
-
valproate beta-oxidation
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PWY-8182
vanillin biosynthesis I
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PWY-5665
xyloglucan degradation II (exoglucanase)
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PWY-6807
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
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LINKS TO OTHER DATABASES (specific for Bradyrhizobium diazoefficiens USDA 110)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA