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Information on Organism Bradyrhizobium sp.

Synonyms:
Bradyrhizobium sp.; Bradyrhizobium sp;
Word Map for Organism Bradyrhizobium sp.
TaxTree of Organism Bradyrhizobium sp.
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Alphaproteobacteria can be found in Brenda BRENDA pathways(class)
Hyphomicrobiales can be found in Brenda BRENDA pathways(order)
Bradyrhizobiaceae can be found in Brenda BRENDA pathways(family)
Bradyrhizobium can be found in Brenda BRENDA pathways(genus)
unclassified Bradyrhizobium can be found in Brenda
Bradyrhizobium sp. can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
-
-
PWY-8086
1,3-propanediol biosynthesis (engineered)
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-
PWY-7385
1-butanol autotrophic biosynthesis (engineered)
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-
PWY-6886
2,4-dichlorophenoxyacetate degradation
-
-
PWY-6085
2,5-xylenol and 3,5-xylenol degradation
-
-
PWY-7698
2-nitrotoluene degradation
-
-
PWY-5641
3-phenylpropionate degradation
-
-
4-aminobutanoate degradation V
-
-
PWY-5022
4-chloro-2-methylphenoxyacetate degradation
-
-
PWY-6086
4-hydroxy-2-nonenal detoxification
-
-
PWY-7112
4-hydroxymandelate degradation
-
-
5-aminoimidazole ribonucleotide biosynthesis I
-
-
PWY-6121
5-aminoimidazole ribonucleotide biosynthesis II
-
-
PWY-6122
5-nitroanthranilate degradation
-
-
PWY-7044
ABH and Lewis epitopes biosynthesis from type 1 precursor disaccharide
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-
PWY-7832
acrylonitrile degradation I
-
-
PWY-7308
acrylonitrile degradation II
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-
PWY-7309
aerobic toluene degradation
-
-
alanine metabolism
-
-
Alanine, aspartate and glutamate metabolism
-
-
aldoxime degradation
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-
P345-PWY
alkylnitronates degradation
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-
PWY-723
allantoin degradation
-
-
Amino sugar and nucleotide sugar metabolism
-
-
Aminobenzoate degradation
-
-
ammonia assimilation cycle I
-
-
PWY-6963
ammonia assimilation cycle II
-
-
PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation II (anaerobic)
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-
P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
arachidonate biosynthesis
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-
Arachidonic acid metabolism
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-
arachidonic acid metabolism
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-
Arginine and proline metabolism
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-
Arginine biosynthesis
-
-
arginine metabolism
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-
Ascorbate and aldarate metabolism
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-
ascorbate metabolism
-
-
assimilatory sulfate reduction I
-
-
SO4ASSIM-PWY
assimilatory sulfate reduction III
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-
PWY-6683
ATP biosynthesis
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-
PWY-7980
autoinducer AI-1 biosynthesis
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-
PWY-6157
avenanthramide biosynthesis
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-
PWY-8157
baicalein degradation (hydrogen peroxide detoxification)
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-
PWY-7214
benzene degradation II (aerobic)
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PWY-8386
benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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-
PWY-6444
Benzoate degradation
-
-
beta-D-glucuronide and D-glucuronate degradation
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PWY-7247
betanidin degradation
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PWY-5461
Bifidobacterium shunt
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-
P124-PWY
biosynthesis of Lewis epitopes (H. pylori)
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PWY-7833
Biosynthesis of secondary metabolites
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-
Biosynthesis of unsaturated fatty acids
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-
C4 and CAM-carbon fixation
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-
C4 photosynthetic carbon assimilation cycle, NAD-ME type
-
-
PWY-7115
C4 photosynthetic carbon assimilation cycle, NADP-ME type
-
-
PWY-241
C4 photosynthetic carbon assimilation cycle, PEPCK type
-
-
PWY-7117
Caffeine metabolism
-
-
Calvin-Benson-Bassham cycle
-
-
CALVIN-PWY
camalexin biosynthesis
-
-
CAMALEXIN-SYN
Caprolactam degradation
-
-
Carbon fixation in photosynthetic organisms
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-
Carbon fixation pathways in prokaryotes
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-
catechol degradation to 2-hydroxypentadienoate I
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-
P183-PWY
catechol degradation to 2-hydroxypentadienoate II
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PWY-5419
Chloroalkane and chloroalkene degradation
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-
Chlorocyclohexane and chlorobenzene degradation
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-
chlorophyll metabolism
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cinnamoyl-CoA biosynthesis
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-
PWY-6457
Citrate cycle (TCA cycle)
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-
citric acid cycle
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-
CO2 fixation into oxaloacetate (anaplerotic)
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PWYQT-4429
complex N-linked glycan biosynthesis (vertebrates)
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PWY-7426
creatine phosphate biosynthesis
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PWY-6158
cutin biosynthesis
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PWY-321
Cutin, suberine and wax biosynthesis
-
-
Cyanoamino acid metabolism
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-
Cysteine and methionine metabolism
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-
D-Amino acid metabolism
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-
D-arabinose degradation III
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PWY-5519
D-galactarate degradation II
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PWY-6497
D-galacturonate degradation II
-
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PWY-6486
D-glucarate degradation II
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-
PWY-6499
D-glucuronate degradation II
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-
PWY-6501
D-xylose degradation III
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-
PWY-6760
D-xylose degradation V
-
-
PWY-8020
degradation of aromatic, nitrogen containing compounds
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-
degradation of pentoses
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-
degradation of sugar acids
-
-
denitrification
-
-
Drug metabolism - cytochrome P450
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-
Drug metabolism - other enzymes
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-
Entner Doudoroff pathway
-
-
Entner-Doudoroff pathway I
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PWY-8004
Entner-Doudoroff pathway II (non-phosphorylative)
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-
NPGLUCAT-PWY
Entner-Doudoroff pathway III (semi-phosphorylative)
-
-
PWY-2221
ephedrine biosynthesis
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PWY-5883
ergothioneine biosynthesis I (bacteria)
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-
PWY-7255
ethanol degradation IV
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PWY66-162
ethene biosynthesis III (microbes)
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PWY-6854
ethene biosynthesis IV (engineered)
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PWY-7126
ethene biosynthesis V (engineered)
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-
PWY-7124
Fatty acid biosynthesis
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-
Flavone and flavonol biosynthesis
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-
Fluorobenzoate degradation
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-
folate transformations I
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PWY-2201
formaldehyde assimilation I (serine pathway)
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PWY-1622
formaldehyde assimilation II (assimilatory RuMP Cycle)
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-
PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
formaldehyde oxidation
-
-
formaldehyde oxidation I
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RUMP-PWY
formaldehyde oxidation II (glutathione-dependent)
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PWY-1801
formaldehyde oxidation IV (thiol-independent)
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-
FORMASS-PWY
formate oxidation to CO2
-
-
PWY-1881
Fructose and mannose metabolism
-
-
Galactose metabolism
-
-
gentisate degradation I
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-
PWY-6223
gentisate degradation II
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PWY-7469
gliotoxin biosynthesis
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PWY-7533
gluconeogenesis
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-
gluconeogenesis I
-
-
GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glucose and glucose-1-phosphate degradation
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GLUCOSE1PMETAB-PWY
glucose degradation (oxidative)
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DHGLUCONATE-PYR-CAT-PWY
glucosinolate biosynthesis from dihomomethionine
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PWYQT-4471
glucosinolate biosynthesis from hexahomomethionine
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PWYQT-4475
glucosinolate biosynthesis from homomethionine
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PWY-1187
glucosinolate biosynthesis from pentahomomethionine
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PWYQT-4474
glucosinolate biosynthesis from phenylalanine
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PWY-2821
glucosinolate biosynthesis from tetrahomomethionine
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PWYQT-4473
glucosinolate biosynthesis from trihomomethionine
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PWYQT-4472
glucosinolate biosynthesis from tryptophan
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PWY-601
glucosinolate biosynthesis from tyrosine
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PWY-7901
glutamate and glutamine metabolism
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-
glutathione biosynthesis
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GLUTATHIONESYN-PWY
Glutathione metabolism
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-
glutathione metabolism
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-
glutathione-mediated detoxification I
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PWY-4061
glutathione-mediated detoxification II
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-
PWY-6842
glutathione-peroxide redox reactions
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PWY-4081
glycerol degradation to butanol
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PWY-7003
Glycerophospholipid metabolism
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-
glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
Glycosaminoglycan biosynthesis - keratan sulfate
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-
Glycosaminoglycan degradation
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Glycosphingolipid biosynthesis - globo and isoglobo series
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-
Glycosphingolipid biosynthesis - lacto and neolacto series
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Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
heme metabolism
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-
heterolactic fermentation
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-
P122-PWY
homocysteine and cysteine interconversion
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PWY-801
homoglutathione biosynthesis
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PWY-6840
hydrogen oxidation I (aerobic)
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-
P283-PWY
hydrogen production
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-
IAA biosynthesis
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incomplete reductive TCA cycle
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P42-PWY
indole glucosinolate activation (intact plant cell)
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-
PWYQT-4477
indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis III (bacteria)
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PWY-3161
indole-3-acetate biosynthesis IV (bacteria)
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PWY-5025
inulin degradation
-
-
PWY-8314
justicidin B biosynthesis
-
-
PWY-6824
L-alanine degradation II (to D-lactate)
-
-
ALACAT2-PWY
L-arabinose degradation III
-
-
PWY-5517
L-arginine degradation X (arginine monooxygenase pathway)
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-
ARGDEG-V-PWY
L-ascorbate biosynthesis IV (animals, D-glucuronate pathway)
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-
PWY3DJ-35471
L-ascorbate biosynthesis VI (plants, myo-inositol pathway)
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-
PWY-8142
L-ascorbate biosynthesis VIII (engineered pathway)
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-
PWY-7165
L-ascorbate degradation II (bacterial, aerobic)
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PWY-6961
L-ascorbate degradation III
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PWY-6960
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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-
PWY-8294
L-glutamate degradation I
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GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
L-glutamine biosynthesis I
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-
GLNSYN-PWY
L-glutamine degradation II
-
-
GLUTAMINEFUM-PWY
L-lyxonate degradation
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PWY-7516
L-methionine biosynthesis I
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-
HOMOSER-METSYN-PWY
L-phenylalanine degradation IV (mammalian, via side chain)
-
-
PWY-6318
L-tyrosine degradation I
-
-
TYRFUMCAT-PWY
lacto-series glycosphingolipids biosynthesis
-
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PWY-7839
lipid metabolism
-
-
luteolin triglucuronide degradation
-
-
PWY-7445
malate/L-aspartate shuttle pathway
-
-
MALATE-ASPARTATE-SHUTTLE-PWY
matairesinol biosynthesis
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-
PWY-5466
Metabolic pathways
-
-
metabolism of disaccharids
-
-
Metabolism of xenobiotics by cytochrome P450
-
-
Methane metabolism
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methane metabolism
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-
Methanobacterium thermoautotrophicum biosynthetic metabolism
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PWY-6146
methanol oxidation to carbon dioxide
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PWY-7616
methanol oxidation to formaldehyde II
-
-
PWY-6510
methanol oxidation to formaldehyde IV
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PWY-5506
methionine metabolism
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-
methyl indole-3-acetate interconversion
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PWY-6303
methylaspartate cycle
methylsalicylate degradation
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PWY18C3-24
Microbial metabolism in diverse environments
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-
mixed acid fermentation
-
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FERMENTATION-PWY
N-Glycan biosynthesis
-
-
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
nitrate assimilation
-
-
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction III (dissimilatory)
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-
PWY0-1321
nitrate reduction IX (dissimilatory)
-
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PWY0-1581
nitrate reduction V (assimilatory)
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PWY-5675
nitrate reduction VI (assimilatory)
-
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PWY490-3
nitrate reduction VII (denitrification)
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PWY-6748
nitrate reduction VIII (dissimilatory)
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PWY0-1352
nitrate reduction VIIIb (dissimilatory)
-
-
PWY0-1573
nitrifier denitrification
-
-
PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
nitrogen fixation I (ferredoxin)
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N2FIX-PWY
Nitrogen metabolism
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-
nitrogen remobilization from senescing leaves
-
-
PWY-6549
Nitrotoluene degradation
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-
non-pathway related
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-
nucleoside and nucleotide degradation (archaea)
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PWY-5532
oleate biosynthesis I (plants)
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PWY-5147
oleate biosynthesis II (animals and fungi)
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PWY-5996
One carbon pool by folate
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-
ophthalmate biosynthesis
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PWY-8043
oxalate degradation II
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PWY-6695
oxalate degradation III
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-
PWY-6696
oxalate degradation VI
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PWY-7985
Oxidative phosphorylation
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oxidative phosphorylation
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palmitoleate biosynthesis II (plants and bacteria)
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PWY-5366
palmitoleate biosynthesis IV (fungi and animals)
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PWY3O-1801
partial TCA cycle (obligate autotrophs)
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PWY-5913
pectin degradation I
-
-
PWY-7246
pectin degradation II
-
-
PWY-7248
pentachlorophenol degradation
-
-
PCPDEG-PWY
Pentose and glucuronate interconversions
-
-
Pentose phosphate pathway
-
-
pentose phosphate pathway
-
-
pentose phosphate pathway (oxidative branch) I
-
-
OXIDATIVEPENT-PWY
Peptidoglycan biosynthesis
-
-
peptidoglycan biosynthesis
-
-
peptidoglycan recycling I
-
-
PWY0-1261
phenol degradation
-
-
Phenylalanine metabolism
-
-
phenylmercury acetate degradation
Phenylpropanoid biosynthesis
-
-
phenylpropanoid biosynthesis
-
-
phenylpropanoid biosynthesis, initial reactions
-
-
PWY1F-467
phosphatidylcholine biosynthesis V
-
-
PWY-6825
phosphatidylcholine biosynthesis VI
-
-
PWY-6826
phosphatidylethanolamine bioynthesis
-
-
Photosynthesis
-
-
photosynthesis
-
-
photosynthesis light reactions
-
-
PWY-101
plastoquinol-9 biosynthesis I
-
-
PWY-1581
Porphyrin and chlorophyll metabolism
-
-
protein S-nitrosylation and denitrosylation
-
-
PWY-7798
protocatechuate degradation II (ortho-cleavage pathway)
-
-
PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY
prunasin and amygdalin biosynthesis
-
-
PWY-7824
Purine metabolism
-
-
purine metabolism
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-
purine nucleobases degradation I (anaerobic)
-
-
P164-PWY
purine nucleobases degradation II (anaerobic)
-
-
PWY-5497
pyruvate fermentation to propanoate I
-
-
P108-PWY
Pyruvate metabolism
-
-
reactive oxygen species degradation
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-
DETOX1-PWY-1
reductive acetyl coenzyme A pathway
-
-
reductive TCA cycle I
-
-
P23-PWY
reductive TCA cycle II
-
-
PWY-5392
retinol biosynthesis
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-
PWY-6857
Riboflavin metabolism
-
-
rosmarinic acid biosynthesis I
-
-
PWY-5048
Rubisco shunt
-
-
PWY-5723
S-(6-hydroxy-4-methylhexan-4-yl)-L-cysteinylglycine degradation
-
-
PWY-8302
salicylate degradation IV
-
-
PWY-6640
seleno-amino acid biosynthesis (plants)
-
-
PWY-6936
Selenocompound metabolism
-
-
sesamin biosynthesis
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-
PWY-5469
sorbitol biosynthesis II
-
-
PWY-5530
sorgoleone biosynthesis
-
-
PWY-5987
Starch and sucrose metabolism
-
-
styrene degradation
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-
PWY-6941
Styrene degradation
-
-
suberin monomers biosynthesis
sucrose biosynthesis I (from photosynthesis)
-
-
SUCSYN-PWY
sucrose degradation II (sucrose synthase)
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-
PWY-3801
sucrose degradation III (sucrose invertase)
-
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PWY-621
sucrose degradation V (sucrose alpha-glucosidase)
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-
PWY66-373
sulfate reduction
-
-
sulfide oxidation I (to sulfur globules)
-
-
P222-PWY
sulfide oxidation III (to sulfite)
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PWY-5285
Sulfur metabolism
-
-
superoxide radicals degradation
-
-
DETOX1-PWY
superpathway of 5-aminoimidazole ribonucleotide biosynthesis
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-
PWY-6277
superpathway of glucose and xylose degradation
-
-
PWY-6901
superpathway of glyoxylate cycle and fatty acid degradation
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-
PWY-561
superpathway of methylsalicylate metabolism
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-
PWY18C3-25
Taurine and hypotaurine metabolism
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-
TCA cycle I (prokaryotic)
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-
TCA
TCA cycle II (plants and fungi)
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-
PWY-5690
TCA cycle III (animals)
-
-
PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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-
PWY-6969
TCA cycle VIII (Chlamydia)
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TCA-1
tetrahydrofolate metabolism
-
-
tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
-
-
PWY-6613
tetrapyrrole biosynthesis I (from glutamate)
-
-
PWY-5188
tetrapyrrole biosynthesis II (from glycine)
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-
PWY-5189
Toluene degradation
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-
toluene degradation II (aerobic) (via 4-methylcatechol)
-
-
TOLUENE-DEG-3-OH-PWY
toluene degradation to 2-hydroxypentadienoate (via toluene-cis-diol)
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-
TOLUENE-DEG-DIOL-PWY
toluene degradation to 2-hydroxypentadienoate I (via o-cresol)
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-
TOLUENE-DEG-2-OH-PWY
toluene degradation to 4-methylphenol
-
-
TOLUENE-DEG-4-OH-PWY
trans-4-hydroxy-L-proline degradation II
-
-
PWY-5159
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
-
-
PWY-5410
trehalose degradation II (cytosolic)
-
-
PWY0-1182
trehalose degradation VI (periplasmic)
-
-
PWY0-1466
Tryptophan metabolism
-
-
Tyrosine metabolism
-
-
tyrosine metabolism
-
-
Ubiquinone and other terpenoid-quinone biosynthesis
-
-
UDP-N-acetylmuramoyl-pentapeptide biosynthesis I (meso-diaminopimelate containing)
-
-
PWY-6387
UDP-N-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
-
-
PWY-6386
UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-diaminopimelate containing)
-
-
PWY-7953
urate conversion to allantoin I
-
-
PWY-5691
Various types of N-glycan biosynthesis
-
-
vernolate biosynthesis III
-
-
PWY-6917
vitamin E biosynthesis (tocopherols)
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-
PWY-1422
xanthommatin biosynthesis
-
-
PWY-8249
Xylene degradation
-
-
top print hide
ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
top print hide
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
-
free-living cells, yeast extract/mannitol medium
Manually annotated by BRENDA team
oxalate enrichment culture
Manually annotated by BRENDA team
soil samples are collected below the Ca-oxalate producing trees Milicia excelsa and Afzelia africana and in a similar soil distant from trees
Manually annotated by BRENDA team
top print hide
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
-
constitutive nitrate reductase exists mostly in membranes
Manually annotated by BRENDA team
top
LINKS TO OTHER DATABASES (specific for Bradyrhizobium sp.)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA