Information on Organism Oryza sativa Japonica Group

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EC NUMBER
COMMENTARY hide
transferred to EC 1.14.14.107
transferred to EC 1.14.14.151
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
preliminary BRENDA-supplied EC number
PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
Biosynthesis of secondary metabolites
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Citrate cycle (TCA cycle)
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citric acid cycle
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L-glutamine biosynthesis III
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Metabolic pathways
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Microbial metabolism in diverse environments
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TCA cycle II (plants and fungi)
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TCA cycle III (animals)
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capsiconiate biosynthesis
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phenylpropanoid biosynthesis
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Phenylpropanoid biosynthesis
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phenylpropanoid biosynthesis
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Ascorbate and aldarate metabolism
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ascorbate metabolism
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L-ascorbate biosynthesis I (L-galactose pathway)
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alanine metabolism
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alkane oxidation
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Arginine and proline metabolism
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aromatic biogenic amine degradation (bacteria)
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beta-Alanine metabolism
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beta-methyl-branched fatty acid alpha-oxidation
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ceramide and sphingolipid recycling and degradation (yeast)
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ceramide degradation by alpha-oxidation
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Chloroalkane and chloroalkene degradation
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dimethylsulfoniopropanoate biosynthesis I (Wollastonia)
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dimethylsulfoniopropanoate biosynthesis II (Spartina)
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dopamine degradation
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Entner Doudoroff pathway
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Entner-Doudoroff pathway III (semi-phosphorylative)
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ethanol degradation II
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ethanol degradation III
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ethanol degradation IV
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fatty acid alpha-oxidation I (plants)
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Fatty acid degradation
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Glycerolipid metabolism
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Glycolysis / Gluconeogenesis
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histamine degradation
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Histidine metabolism
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histidine metabolism
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hypotaurine degradation
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Insect hormone biosynthesis
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L-tryptophan degradation X (mammalian, via tryptamine)
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Limonene and pinene degradation
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limonene degradation IV (anaerobic)
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Lysine degradation
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NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
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non-pathway related
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noradrenaline and adrenaline degradation
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octane oxidation
phytol degradation
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propanol degradation
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putrescine degradation III
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Pyruvate metabolism
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serotonin degradation
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sphingosine and sphingosine-1-phosphate metabolism
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Tryptophan metabolism
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Valine, leucine and isoleucine degradation
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choline degradation I
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choline degradation IV
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glycine betaine biosynthesis
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glycine betaine biosynthesis I (Gram-negative bacteria)
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glycine betaine biosynthesis II (Gram-positive bacteria)
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glycine betaine biosynthesis III (plants)
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Glycine, serine and threonine metabolism
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Bifidobacterium shunt
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Carbon fixation in photosynthetic organisms
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Entner-Doudoroff pathway I
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formaldehyde assimilation III (dihydroxyacetone cycle)
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gluconeogenesis I
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gluconeogenesis III
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glycerol degradation to butanol
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glycolysis
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glycolysis I (from glucose 6-phosphate)
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glycolysis II (from fructose 6-phosphate)
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glycolysis III (from glucose)
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glycolysis IV (plant cytosol)
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heterolactic fermentation
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sucrose biosynthesis I (from photosynthesis)
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superpathway of glucose and xylose degradation
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acetate fermentation
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acetyl-CoA biosynthesis II (NADP-dependent pyruvate dehydrogenase)
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oxidative decarboxylation of pyruvate
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photosynthesis
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acetyl CoA biosynthesis
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pyruvate decarboxylation to acetyl CoA
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2-oxoglutarate decarboxylation to succinyl-CoA
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vitamin B1 metabolism
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3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)
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chlorophyll metabolism
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Porphyrin and chlorophyll metabolism
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isoprenoid biosynthesis
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Terpenoid backbone biosynthesis
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Carotenoid biosynthesis
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carotenoid biosynthesis
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4-aminobutanoate degradation V
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Alanine, aspartate and glutamate metabolism
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Arginine biosynthesis
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ethylene biosynthesis IV (engineered)
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glutamate and glutamine metabolism
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L-alanine degradation II (to D-lactate)
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L-glutamate degradation I
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L-glutamate degradation V (via hydroxyglutarate)
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methylaspartate cycle
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Nitrogen metabolism
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Taurine and hypotaurine metabolism
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L-glutamate biosynthesis I
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L-glutamine degradation II
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ammonia assimilation cycle I
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L-glutamate biosynthesis IV
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beta-alanine biosynthesis I
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N-methyl-Delta1-pyrrolinium cation biosynthesis
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glycine biosynthesis II
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glycine cleavage
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glycine metabolism
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ammonia assimilation cycle II
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Glyoxylate and dicarboxylate metabolism
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L-glutamate biosynthesis V
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Folate biosynthesis
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folate transformations II (plants)
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folate transformations III (E. coli)
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One carbon pool by folate
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tetrahydrofolate biosynthesis
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tetrahydrofolate metabolism
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ascorbate recycling (cytosolic)
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nitrate reduction II (assimilatory)
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ammonia oxidation II (anaerobic)
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denitrification
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nitrate reduction I (denitrification)
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nitrate reduction VII (denitrification)
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nitrifier denitrification
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nitrite-dependent anaerobic methane oxidation
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ascorbate glutathione cycle
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Glutathione metabolism
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methanol oxidation to formaldehyde IV
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reactive oxygen species degradation
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superoxide radicals degradation
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baicalein degradation (hydrogen peroxide detoxification)
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betanidin degradation
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justicidin B biosynthesis
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luteolin triglucuronide degradation
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matairesinol biosynthesis
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sesamin biosynthesis
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L-ascorbate degradation II (bacterial, aerobic)
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L-ascorbate degradation III
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L-ascorbate degradation V
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alpha-Linolenic acid metabolism
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divinyl ether biosynthesis II
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jasmonic acid biosynthesis
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Linoleic acid metabolism
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traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
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L-phenylalanine degradation IV (mammalian, via side chain)
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L-tyrosine degradation I
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Phenylalanine metabolism
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plastoquinol-9 biosynthesis I
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Tyrosine metabolism
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tyrosine metabolism
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Ubiquinone and other terpenoid-quinone biosynthesis
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vitamin E biosynthesis (tocopherols)
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abscisic acid biosynthesis
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9-lipoxygenase and 9-allene oxide synthase pathway
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9-lipoxygenase and 9-hydroperoxide lyase pathway
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divinyl ether biosynthesis I
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vernolate biosynthesis III
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Diterpenoid biosynthesis
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gibberellin biosynthesis III (early C-13 hydroxylation)
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gibberellin inactivation I (2beta-hydroxylation)
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nitric oxide biosynthesis II (mammals)
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1,5-anhydrofructose degradation
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acetone degradation I (to methylglyoxal)
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acetone degradation III (to propane-1,2-diol)
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Amaryllidacea alkaloids biosynthesis
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Aminobenzoate degradation
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Arachidonic acid metabolism
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arachidonic acid metabolism
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bupropion degradation
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Caffeine metabolism
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Drug metabolism - cytochrome P450
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melatonin degradation I
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Metabolism of xenobiotics by cytochrome P450
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nicotine degradation IV
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nicotine degradation V
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Retinol metabolism
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Steroid hormone biosynthesis
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vanillin biosynthesis I
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diterpene phytoalexins precursors biosynthesis
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Flavone and flavonol biosynthesis
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Flavonoid biosynthesis
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flavonoid biosynthesis (in equisetum)
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flavonol biosynthesis
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leucodelphinidin biosynthesis
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leucopelargonidin and leucocyanidin biosynthesis
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luteolin biosynthesis
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syringetin biosynthesis
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tricin biosynthesis
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sporopollenin precursors biosynthesis
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Sesquiterpenoid and triterpenoid biosynthesis
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echinatin biosynthesis
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eriodictyol C-glucosylation
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flavonoid di-C-glucosylation
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naringenin C-glucosylation
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pinocembrin C-glucosylation
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alpha-linolenate biosynthesis I (plants and red algae)
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hydroxylated fatty acid biosynthesis (plants)
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icosapentaenoate biosynthesis VI (fungi)
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phospholipid desaturation
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(7Z,10Z,13Z)-hexadecatrienoate biosynthesis
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glycolipid desaturation
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ethylene biosynthesis III (microbes)
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Photosynthesis
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photosynthesis light reactions
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isopenicillin N biosynthesis
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Penicillin and cephalosporin biosynthesis
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methyl indole-3-acetate interconversion
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acetoin degradation
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Butanoate metabolism
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C5-Branched dibasic acid metabolism
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isoleucine metabolism
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L-isoleucine biosynthesis I (from threonine)
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L-isoleucine biosynthesis II
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L-isoleucine biosynthesis III
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L-isoleucine biosynthesis IV
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L-valine biosynthesis
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Pantothenate and CoA biosynthesis
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pyruvate fermentation to (R)-acetoin I
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pyruvate fermentation to (R)-acetoin II
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pyruvate fermentation to (S)-acetoin
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pyruvate fermentation to isobutanol (engineered)
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valine metabolism
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Valine, leucine and isoleucine biosynthesis
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resveratrol biosynthesis
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Stilbenoid, diarylheptanoid and gingerol biosynthesis
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phosalacine biosynthesis
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phosphinothricin tripeptide biosynthesis
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Phosphonate and phosphinate metabolism
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(9Z)-tricosene biosynthesis
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arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)
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arachidonate biosynthesis V (8-detaturase, mammals)
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Biosynthesis of unsaturated fatty acids
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Fatty acid elongation
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icosapentaenoate biosynthesis III (8-desaturase, mammals)
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icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)
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juniperonate biosynthesis
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sciadonate biosynthesis
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stearate biosynthesis I (animals)
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ultra-long-chain fatty acid biosynthesis
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very long chain fatty acid biosynthesis I
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very long chain fatty acid biosynthesis II
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protein ubiquitination
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glycogen degradation I
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glycogen degradation II
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glycogen metabolism
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Starch and sucrose metabolism
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starch degradation III
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starch degradation V
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sucrose biosynthesis II
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glycogen biosynthesis
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glycogen biosynthesis II (from UDP-D-Glucose)
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cellulose biosynthesis
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sucrose degradation II (sucrose synthase)
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sucrose biosynthesis III
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glycogen biosynthesis I (from ADP-D-Glucose)
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glycogen biosynthesis III (from alpha-maltose 1-phosphate)
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starch biosynthesis
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lipid A biosynthesis
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lipid A-core biosynthesis (E. coli K-12)
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Galactose metabolism
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lychnose and isolychnose biosynthesis
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stachyose biosynthesis
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stellariose and mediose biosynthesis
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cytokinin-O-glucosides biosynthesis
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Zeatin biosynthesis
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4-hydroxy-2-nonenal detoxification
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camalexin biosynthesis
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Drug metabolism - other enzymes
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gliotoxin biosynthesis
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glutathione metabolism
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glutathione-mediated detoxification I
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glutathione-mediated detoxification II
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indole glucosinolate activation (intact plant cell)
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pentachlorophenol degradation
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trans-zeatin biosynthesis
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2'-deoxymugineic acid phytosiderophore biosynthesis
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L-nicotianamine biosynthesis
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methionine metabolism
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vitamin E biosynthesis (tocotrienols)
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vitamin E metabolism
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anaerobic energy metabolism (invertebrates, cytosol)
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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C4 photosynthetic carbon assimilation cycle, PEPCK type
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L-alanine biosynthesis II
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L-alanine degradation III
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photorespiration
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L-arginine degradation I (arginase pathway)
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L-arginine degradation VI (arginase 2 pathway)
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L-citrulline biosynthesis
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L-Ndelta-acetylornithine biosynthesis
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L-ornithine biosynthesis II
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L-ornithine degradation II (Stickland reaction)
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L-proline biosynthesis II (from arginine)
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L-proline biosynthesis III (from L-ornithine)
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proline metabolism
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(S)-reticuline biosynthesis I
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4-hydroxybenzoate biosynthesis I (eukaryotes)
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4-hydroxyphenylpyruvate biosynthesis
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atromentin biosynthesis
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indole-3-acetate biosynthesis II
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indole-3-acetate biosynthesis VI (bacteria)
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L-phenylalanine biosynthesis I
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L-phenylalanine degradation II (anaerobic)
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L-phenylalanine degradation III
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L-phenylalanine degradation VI (Stickland reaction)
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L-tryptophan degradation IV (via indole-3-lactate)
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L-tryptophan degradation VIII (to tryptophol)
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L-tryptophan degradation XIII (Stickland reaction)
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L-tyrosine biosynthesis I
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L-tyrosine degradation II
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L-tyrosine degradation III
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L-tyrosine degradation IV (to 4-methylphenol)
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L-tyrosine degradation V (Stickland reaction)
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rosmarinic acid biosynthesis I
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tryptophan metabolism
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formaldehyde assimilation I (serine pathway)
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L-serine biosynthesis II
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Methane metabolism
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arginine metabolism
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L-arginine degradation II (AST pathway)
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indole-3-acetate biosynthesis I
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indolmycin biosynthesis
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1,3-propanediol biosynthesis (engineered)
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Amino sugar and nucleotide sugar metabolism
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Fructose and mannose metabolism
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GDP-glucose biosynthesis
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glucose and glucose-1-phosphate degradation
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Neomycin, kanamycin and gentamicin biosynthesis
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Streptomycin biosynthesis
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sucrose degradation III (sucrose invertase)
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trehalose degradation I (low osmolarity)
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trehalose degradation II (cytosolic)
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trehalose degradation IV
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trehalose degradation V
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UDP-N-acetyl-D-galactosamine biosynthesis II
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UDP-N-acetyl-D-glucosamine biosynthesis II
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Glycerophospholipid metabolism
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phosphatidate metabolism, as a signaling molecule
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type I lipoteichoic acid biosynthesis (S. aureus)
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1-butanol autotrophic biosynthesis (engineered)
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Calvin-Benson-Bassham cycle
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adenosine ribonucleotides de novo biosynthesis
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Purine metabolism
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purine metabolism
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Thiamine metabolism
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guanosine ribonucleotides de novo biosynthesis
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degradation of hexoses
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Pentose and glucuronate interconversions
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stachyose degradation
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UDP-alpha-D-glucose biosynthesis I
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d-mannose degradation
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GDP-mannose biosynthesis
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anhydromuropeptides recycling I
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UDP-GlcNAc biosynthesis
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UDP-N-acetyl-D-glucosamine biosynthesis I
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glucosylglycerol biosynthesis
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mRNA capping I
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tRNA processing
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extended VTC2 cycle
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VTC2 cycle
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phosphatidylethanolamine bioynthesis
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phosphatidylserine and phosphatidylethanolamine biosynthesis I
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superpathway of phospholipid biosynthesis II (plants)
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C4 photosynthetic carbon assimilation cycle, NADP-ME type
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Carbon fixation pathways in prokaryotes
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thyroid hormone metabolism II (via conjugation and/or degradation)
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lipid metabolism
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methylsalicylate degradation
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retinol biosynthesis
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superpathway of methylsalicylate metabolism
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Bisphenol degradation
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triacylglycerol degradation
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anandamide biosynthesis I
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anandamide biosynthesis II
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aspirin triggered resolvin D biosynthesis
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aspirin triggered resolvin E biosynthesis
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Ether lipid metabolism
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phosphatidylcholine acyl editing
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phospholipases
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phospholipid remodeling (phosphatidate, yeast)
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phospholipid remodeling (phosphatidylcholine, yeast)
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phospholipid remodeling (phosphatidylethanolamine, yeast)
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plasmalogen degradation
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resolvin D biosynthesis
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chlorophyll a degradation I
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chlorophyll a degradation II
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chlorophyll a degradation III
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metabolism of disaccharids
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mycolate biosynthesis
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trehalose biosynthesis I
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trehalose biosynthesis II
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trehalose biosynthesis III
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Inositol phosphate metabolism
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phenol degradation
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phytate degradation I
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2-arachidonoylglycerol biosynthesis
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D-myo-inositol (1,4,5)-trisphosphate biosynthesis
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D-myo-inositol-5-phosphate metabolism
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starch degradation
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starch degradation I
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starch degradation II
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chitin degradation I (archaea)
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chitin degradation II (Vibrio)
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chitin degradation III (Serratia)
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Other glycan degradation
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Sphingolipid metabolism
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Glycosaminoglycan degradation
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Glycosphingolipid biosynthesis - ganglio series
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lactose degradation II
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xyloglucan degradation II (exoglucanase)
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sucrose degradation V (sucrose alpha-glucosidase)
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beta-D-glucuronide and D-glucuronate degradation
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degradation of sugar acids
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trehalose biosynthesis V
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coniferin metabolism
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nocardicin A biosynthesis
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Atrazine degradation
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urea cycle
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urea degradation II
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allantoin degradation
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allantoin degradation to glyoxylate II
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atrazine degradation I (aerobic)
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atrazine degradation III
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degradation of aromatic, nitrogen containing compounds
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Betalain biosynthesis
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betaxanthin biosynthesis
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betaxanthin biosynthesis (via dopamine)
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catecholamine biosynthesis
Isoquinoline alkaloid biosynthesis
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serotonin and melatonin biosynthesis
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CO2 fixation into oxaloacetate (anaplerotic)
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ethylene biosynthesis V (engineered)
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gluconeogenesis
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gluconeogenesis II (Methanobacterium thermoautotrophicum)
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Methanobacterium thermoautotrophicum biosynthetic metabolism
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mixed acid fermentation
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partial TCA cycle (obligate autotrophs)
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reductive TCA cycle I
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nucleoside and nucleotide degradation (archaea)
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Rubisco shunt
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Cysteine and methionine metabolism
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spermidine biosynthesis I
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spermidine biosynthesis III
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spermine biosynthesis
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3-hydroxypropanoate cycle
-
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3-hydroxypropanoate/4-hydroxybutanate cycle
-
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cyanate degradation
glyoxylate assimilation
-
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ent-kaurene biosynthesis I
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diterpene phytoalexins precursors biosynthesis
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kauralexin biosynthesis
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oryzalide A biosynthesis
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benzoate biosynthesis II (CoA-independent, non-beta-oxidative)
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cinnamoyl-CoA biosynthesis
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ephedrine biosynthesis
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phenylpropanoid biosynthesis, initial reactions
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suberin monomers biosynthesis
methylglyoxal degradation
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methylglyoxal degradation I
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heme b biosynthesis I (aerobic)
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heme b biosynthesis II (oxygen-independent)
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heme metabolism
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superpathway of heme b biosynthesis from uroporphyrinogen-III
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colanic acid building blocks biosynthesis
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D-galactose degradation I (Leloir pathway)
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D-galactose detoxification
-
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mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
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superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
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UDP-alpha-D-galactose biosynthesis
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GDP-L-galactose biosynthesis
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trans-lycopene biosynthesis II (oxygenic phototrophs and green sulfur bacteria)
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5-deoxystrigol biosynthesis
-
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beta-(1,4)-mannan degradation
-
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beta-1,4-D-mannosyl-N-acetyl-D-glucosamine degradation
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D-mannose degradation
-
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degradation of pentoses
-
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mannitol biosynthesis
-
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mannitol degradation II
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Biosynthesis of enediyne antibiotics
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cholesterol biosynthesis
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lanosterol biosynthesis
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Steroid biosynthesis
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trehalose biosynthesis IV
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parkeol biosynthesis
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beta-carotene biosynthesis
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chlorobactene biosynthesis
-
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flexixanthin biosynthesis
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isorenieratene biosynthesis I (actinobacteria)
-
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lutein biosynthesis
-
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myxol-2' fucoside biosynthesis
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okenone biosynthesis
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Aminoacyl-tRNA biosynthesis
-
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tRNA charging
-
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4-coumarate degradation (aerobic)
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4-coumarate degradation (anaerobic)
-
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4-hydroxybenzoate biosynthesis III (plants)
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-
6-gingerol analog biosynthesis (engineered)
-
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caffeoylglucarate biosynthesis
-
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coumarins biosynthesis (engineered)
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flavonoid biosynthesis
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naringenin biosynthesis (engineered)
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phaselate biosynthesis
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trans-caffeate degradation (aerobic)
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umbelliferone biosynthesis
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xanthohumol biosynthesis
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L-glutamine biosynthesis I
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nitrate reduction V (assimilatory)
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nitrate reduction VI (assimilatory)
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lipoate biosynthesis
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lipoate biosynthesis and incorporation II
-
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Lipoic acid metabolism
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pantothenate biosynthesis
-
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phosphopantothenate biosynthesis I
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NAD metabolism
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NAD salvage pathway I (PNC VI cycle)
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NAD salvage pathway V (PNC V cycle)
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Nicotinate and nicotinamide metabolism
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pyridine nucleotide cycling (plants)
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aspartate and asparagine metabolism
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L-asparagine biosynthesis I
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L-leucine degradation I
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leucine metabolism
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ATP biosynthesis
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Oxidative phosphorylation
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oxidative phosphorylation
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oleandomycin activation/inactivation
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
PGL, encoding chlorophyllide a oxygenase 1, is mainly expressed in the chlorenchyma
Manually annotated by BRENDA team
OsGLN1,1, under nitrogen-limited condition; OsGLN1,2, under nitrogen-sufficient condition
Manually annotated by BRENDA team
OsGLN1,1, under nitrogen-limited condition; OsGLN1,2, under nitrogen-sufficient condition
Manually annotated by BRENDA team
high expression level
Manually annotated by BRENDA team
-
highest expression in the leaf, followed by the pod and the panicle
Manually annotated by BRENDA team
OsUAM1 and OsUAM2 are expressed ubiquitously throughout plant development, but OsUAM3 is expressed primarily in reproductive tissue, particularly at the pollen cell wall formation developmental stage
Manually annotated by BRENDA team
low expression level
Manually annotated by BRENDA team
additional information
LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
NADH-GOGAT is primarily located in plastids of non-photosynthetic tissues such as roots; NADH-GOGAT is primarily located in plastids of non-photosynthetic tissues such as roots
Manually annotated by BRENDA team
additional information
LINKS TO OTHER DATABASES (specific for Oryza sativa Japonica Group)