2.1.3.9: N-acetylornithine carbamoyltransferase
This is an abbreviated version!
For detailed information about N-acetylornithine carbamoyltransferase, go to the full flat file.
Word Map on EC 2.1.3.9
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2.1.3.9
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knot
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trefoil
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campestris
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thread
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carbamylation
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methanocaldococcus
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unknotted
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jannaschii
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coarse-grained
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bacteroides
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pulling
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fragilis
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chaperonin
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trajectories
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entanglement
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cage
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smallest
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refolded
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eubacteria
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putrescine
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atomistic
- 2.1.3.9
-
knot
-
trefoil
- campestris
-
thread
-
carbamylation
-
methanocaldococcus
-
unknotted
- jannaschii
-
coarse-grained
- bacteroides
-
pulling
- fragilis
- chaperonin
-
trajectories
-
entanglement
-
cage
-
smallest
-
refolded
- eubacteria
- putrescine
-
atomistic
Reaction
Synonyms
acetylornithine transcarbamylase, AOTC, AOTCase, MJ0366, More, N-acetyl-L-ornithine transcarbamylase, N-acetylornithine carbamoyltransferase, N-acetylornithine transcarbamoylase, N-acetylornithine transcarbamylase
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General Information
General Information on EC 2.1.3.9 - N-acetylornithine carbamoyltransferase
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evolution
AOTCase is involved in an arginine biosynthesis pathway in plant pathogens of the Xanthomonadaceae family such as Xylella and Xanthomonas
metabolism
AOTCase is involved in an arginine biosynthesis pathway in plant pathogens of the Xanthomonadaceae family such as Xylella and Xanthomonas
additional information
Lys302 is post-translationally carboxylated. The carboxyl group on Lys302 forms a strong hydrogen bonding network with surrounding active site residues, Lys252, Ser253, His293, and Glu92 from the adjacent subunit either directly or via a water molecule. The carboxyl group is involved in binding N-acetyl-L-ornithine via a water molecule. The posttranslational modification of lysine 302 has an important role in catalysis
additional information
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Lys302 is post-translationally carboxylated. The carboxyl group on Lys302 forms a strong hydrogen bonding network with surrounding active site residues, Lys252, Ser253, His293, and Glu92 from the adjacent subunit either directly or via a water molecule. The carboxyl group is involved in binding N-acetyl-L-ornithine via a water molecule. The posttranslational modification of lysine 302 has an important role in catalysis
additional information
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stochastic simulations of coarse-grained protein models used to investigate the propensity to form knots in early stages of protein folding, comparison of natively-knotted N-acetylornithine carbamoyltransferase, AOTCase, and an unknotted ornithine carbamoyltransferase, OTCase, EC 2.1.3.3, protein and amino acid interactions, mechanism, overview. The different entanglement of the two transcarbamylases follows from the tendency of the C-terminal to point away from (for OTCase) or approach and eventually thread (for AOTCase) other regions of partly-folded protein. The analysis of the OTCase/AOTCase pair clarifies that natively-knotted proteins can spontaneously knot during early folding stages and that non-native sequence-dependent interactions are important for promoting and disfavouring early knotting events. Knotting usually results from the threading of the C-terminal through loops present in the loose protein globule. Simulation of the early folding process of the two transcarbamylases, non-native interactions, kinetics, and modeling, overview