2.7.1.15: ribokinase

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For detailed information about ribokinase, go to the full flat file.

Reaction

Synonyms

At1g17160, D-ribokinase, deoxyribokinase, Ms4585, rbk, RBSK, rbsK1, ribokinase, ribokinase (phosphorylating), Rv2436, Sa239

ECTree

     2 Transferases

         2.7 Transferring phosphorus-containing groups

             2.7.1 Phosphotransferases with an alcohol group as acceptor

                2.7.1.15 ribokinase

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Results	in table
5	Activating Compound
34168	AA Sequence
2	Application
1	CAS Registry Number
19	Cloned(Commentary)
11	Crystallization (Commentary)
13	Disease/ Diagnostics
2	Expression
6	General Information
41	Inhibitors
11	kcat/KM [mM/s]
9	Ki Value [mM]
43	KM Value [mM]
42	Metals/Ions
6	Molecular Weight [Da]
13	Natural Substrates/ Products (Substrates)
47	Organism
5	Pathway
113	PDB ID
6	pH Optimum
1	pH Range
6	Protein Variants
12	Purification (Commentary)
1	Reaction
4	Reaction Type
45	Reference
1	Source Tissue
4	Specific Activity [micromol/min/mg]
3	Storage Stability
66	Substrates and Products (Substrate)
5	Subunits
19	Synonyms
1	Systematic Name
9	Temperature Optimum [°C]
2	Temperature Stability [°C]
16	Turnover Number [1/s]

Crystallization

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Crystallization on EC 2.7.1.15 - ribokinase

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CRYSTALLIZATION (Commentary)

ORGANISM

UNIPROT

LITERATURE

20°C or 16°C, hanging drop method, 7 mg/ml protein mixed with an equal volume of mother liquor

Escherichia coli

P0A9J6

641004

4°C, hanging drop vapour diffusion, Cs-bound ternary complex structure: P212121

Escherichia coli

P0A9J6

641006

ribokinase in complex with ribose and dinucleotide: there is one 33000 Da monomer of ribokinase in the asymmetric unit but the protein forms a dimer around a crystallographic twofold axis

Escherichia coli

-

641003

several different types of crystals, apo ribokinase: space group P1 or P3x21, ATP ribokinase: tetragonal, ribose/AMP-PNP: P6x22

Escherichia coli

-

641002

crystals are obtained using the sitting-drop method. Diffraction data are collected to a resolution of 3.1 A

Halothermothrix orenii

B8CWQ8

721227

crystals obtained by the hanging-drop vapour-diffusion method at 23°C diffract to 1.95 A resolution and belong to the hexagonal space group P61, with unit-cell parameters a = b = 100.25, c = 126.77 A

Leishmania donovani

E9BIX7

760297

hanging drop vapour diffusion method, the crystal structure is determined in the apo and complex forms with several nucleotides (ATP, AMPPCP and ADP) in the presence of Na+ ion

Leishmania donovani

E9BIX7

761262

by using the hanging-drop vapour-diffusion method, large crystals appear at 21.85°C in conditions consisting of 23% PEG 3000, 0.1 M sodium citrate pH 5.6, the crystals diffract to 2.9 A resolution and belong to space group P6122 or P6522, with unit-cell parameters a=b=91.8 A, c=160.7 A

Staphylococcus aureus

-

695385

crystal structure of Sa239 in the absence of monovalent ions. The structure of Sa239 demonstrates that the C-terminal tail protrudes from the remaining part and interacts with the neighboring molecule, resulting in an dimerization form

Staphylococcus aureus

A0A0H2WZY4

723067

capillary counter-diffusion technique, 2.87 A resolution

Thermus sp. 2.9

A0A0B0SD75

760926

in complex with ribose and ADP, to 3.4 and 1.75 A resolution, respectively. Both crystals possess symmetry consistent with space group P1

Vibrio cholerae

A0A0H2UL04

737373