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show all sequences of 1.12.98.3

Differences in hydrogenase gene expression between Methanosarcina acetivorans and Methanosarcina barkeri

Guss, A.M.; Kulkarni, G.; Metcalf, W.W.; J. Bacteriol. 191, 2826-2833 (2009)

Data extracted from this reference:

Cloned(Commentary)
Commentary
Organism
plasmid manipulation and isolation in Escherichia coli, promoter fusion plasmids are transformed into Methanosarcina acetivorans WWM82 via liposome-mediated transformation
Methanosarcina acetivorans
plasmid manipulation and isolation in Escherichia coli, promoter fusion plasmids are transformed into Methanosarcina barkeri WWM85 via liposome-mediated transformation
Methanosarcina barkeri
Organism
Organism
Primary Accession No. (UniProt)
Commentary
Textmining
Methanosarcina acetivorans
-
-
-
Methanosarcina barkeri
-
-
-
Substrates and Products (Substrate)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
additional information
growth on H2-CO2
704289
Methanosarcina barkeri
?
-
-
-
-
additional information
no growth on H2-CO2, inability to metabolize hydrogen, the lack of hydrogenase activity in Methanosarcina acetivorans extracts is not due to obvious mutations in either the coding regions or the promoters, hydrogenases are inactivated at the level of transcription and/or translation, Methanosarcina acetivorans possesses the machinery to express hydrogenases, although it does not express its own hydrogenases. This is consistent with specific inactivation of the Methanosarcina acetivorans hydrogenase promoters and highlight the importance of testing hypotheses generated by using genomic data
704289
Methanosarcina acetivorans
?
-
-
-
-
Cloned(Commentary) (protein specific)
Commentary
Organism
plasmid manipulation and isolation in Escherichia coli, promoter fusion plasmids are transformed into Methanosarcina acetivorans WWM82 via liposome-mediated transformation
Methanosarcina acetivorans
plasmid manipulation and isolation in Escherichia coli, promoter fusion plasmids are transformed into Methanosarcina barkeri WWM85 via liposome-mediated transformation
Methanosarcina barkeri
Substrates and Products (Substrate) (protein specific)
Substrates
Commentary Substrates
Literature (Substrates)
Organism
Products
Commentary (Products)
Literature (Products)
Organism (Products)
Reversibility
additional information
growth on H2-CO2
704289
Methanosarcina barkeri
?
-
-
-
-
additional information
no growth on H2-CO2, inability to metabolize hydrogen, the lack of hydrogenase activity in Methanosarcina acetivorans extracts is not due to obvious mutations in either the coding regions or the promoters, hydrogenases are inactivated at the level of transcription and/or translation, Methanosarcina acetivorans possesses the machinery to express hydrogenases, although it does not express its own hydrogenases. This is consistent with specific inactivation of the Methanosarcina acetivorans hydrogenase promoters and highlight the importance of testing hypotheses generated by using genomic data
704289
Methanosarcina acetivorans
?
-
-
-
-
Other publictions for EC 1.12.98.3
No.
1st author
Pub Med
title
organims
journal
volume
pages
year
Activating Compound
Application
Cloned(Commentary)
Crystallization (Commentary)
Engineering
General Stability
Inhibitors
KM Value [mM]
Localization
Metals/Ions
Molecular Weight [Da]
Natural Substrates/ Products (Substrates)
Organic Solvent Stability
Organism
Oxidation Stability
Posttranslational Modification
Purification (Commentary)
Reaction
Renatured (Commentary)
Source Tissue
Specific Activity [micromol/min/mg]
Storage Stability
Substrates and Products (Substrate)
Subunits
Temperature Optimum [°C]
Temperature Range [°C]
Temperature Stability [°C]
Turnover Number [1/s]
pH Optimum
pH Range
pH Stability
Cofactor
Ki Value [mM]
pI Value
IC50 Value
Activating Compound (protein specific)
Application (protein specific)
Cloned(Commentary) (protein specific)
Cofactor (protein specific)
Crystallization (Commentary) (protein specific)
Engineering (protein specific)
General Stability (protein specific)
IC50 Value (protein specific)
Inhibitors (protein specific)
Ki Value [mM] (protein specific)
KM Value [mM] (protein specific)
Localization (protein specific)
Metals/Ions (protein specific)
Molecular Weight [Da] (protein specific)
Natural Substrates/ Products (Substrates) (protein specific)
Organic Solvent Stability (protein specific)
Oxidation Stability (protein specific)
Posttranslational Modification (protein specific)
Purification (Commentary) (protein specific)
Renatured (Commentary) (protein specific)
Source Tissue (protein specific)
Specific Activity [micromol/min/mg] (protein specific)
Storage Stability (protein specific)
Substrates and Products (Substrate) (protein specific)
Subunits (protein specific)
Temperature Optimum [°C] (protein specific)
Temperature Range [°C] (protein specific)
Temperature Stability [°C] (protein specific)
Turnover Number [1/s] (protein specific)
pH Optimum (protein specific)
pH Range (protein specific)
pH Stability (protein specific)
pI Value (protein specific)
Expression
General Information
General Information (protein specific)
Expression (protein specific)
KCat/KM [mM/s]
KCat/KM [mM/s] (protein specific)
741956
Welte
Bioenergetics and anaerobic r ...
Methanosarcina mazei
Biochim. Biophys. Acta
1837
1130-1147
2014
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704289
Guss
Differences in hydrogenase gen ...
Methanosarcina acetivorans, Methanosarcina barkeri
J. Bacteriol.
191
2826-2833
2009
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440302
Beifuss
Methanophenazine: structure, t ...
Methanosarcina sp.
Angew. Chem.
39
2470-2472
2000
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727829
Baumer
The F420H2 dehydrogenase from ...
Methanosarcina mazei, Methanosarcina mazei DSM 3647
J. Biol. Chem.
275
17968-17973
2000
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439643
Meuer
Purification and catalytic pro ...
Methanosarcina barkeri
Eur. J. Biochem.
265
325-335
1999
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440300
Deppenmeier
Novel reactions involved in en ...
Methanosarcina barkeri, Methanosarcina mazei
FEBS Lett.
457
291-297
1999
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440299
Abken
Isolation and characterization ...
Methanosarcina mazei
J. Bacteriol.
180
2027-2032
1998
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440297
Arnikar
-
Effect of gamma-radiation on M ...
Methanosarcina sp.
J. Radioanal. Nucl. Chem.
142
349-358
1990
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440298
Bhosale
-
Distribution of transition met ...
Methanosarcina sp.
FEMS Microbiol. Lett.
70
241-247
1990
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