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Literature summary extracted from

  • Akhtar, T.A.; Matsuba, Y.; Schauvinhold, I.; Yu, G.; Lees, H.A.; Klein, S.E.; Pichersky, E.
    The tomato cis-prenyltransferase gene family (2013), Plant J., 73, 640-652.
    View publication on PubMed

Cloned(Commentary)

EC Number Cloned (Comment) Organism
2.5.1.28 gene SlCPT1, located on chromosome 8, and other gene of the CPT gene family, DNA and amino acid sequence determination and analysis, phylogenetic analysis Solanum lycopersicum
2.5.1.92 gene SlCPT6, located on chromosome 6, phylogenetic analysis, recombinant expression of GFP-tagged enzyme in Arabidopsis thaliana mesophyll protoplasts Solanum lycopersicum

Protein Variants

EC Number Protein Variants Comment Organism
2.5.1.28 additional information constitutive and trichome-specific RNAi-mediated knockdown of NDPS1, RNAi-mediated suppression of NDPS1 with greater reductions achieved with the general 35S promoter compared to the trichome-specific MKS1 promoter, phenotypes, overview Solanum lycopersicum

Localization

EC Number Localization Comment Organism GeneOntology No. Textmining
2.5.1.28 chloroplast immunohistochemic analysis Solanum lycopersicum 9507
-
2.5.1.92 mitochondrion probably Solanum lycopersicum 5739
-

Natural Substrates/ Products (Substrates)

EC Number Natural Substrates Organism Comment (Nat. Sub.) Natural Products Comment (Nat. Pro.) Rev. Reac.
2.5.1.28 dimethylallyl diphosphate + isopentenyl diphosphate Solanum lycopersicum
-
 diphosphate + neryl diphosphate
-
 ?
2.5.1.28 dimethylallyl diphosphate + isopentenyl diphosphate Solanum lycopersicum MP-1
-
 diphosphate + neryl diphosphate
-
 ?
2.5.1.92 neryl diphosphate + 2 isopentenyl diphosphate Solanum lycopersicum
-
 2 diphosphate + (2Z,6Z)-farnesyl diphosphate
-
 ?
2.5.1.92 neryl diphosphate + 2 isopentenyl diphosphate Solanum lycopersicum MP-1
-
 2 diphosphate + (2Z,6Z)-farnesyl diphosphate
-
 ?

Organism

EC Number Organism UniProt Comment Textmining
2.5.1.28 Solanum lycopersicum C1K5M2 gene SlCPT1
-
2.5.1.28 Solanum lycopersicum MP-1 C1K5M2 gene SlCPT1
-
2.5.1.92 Solanum lycopersicum
-
-
-
2.5.1.92 Solanum lycopersicum K7W9N9 gene SlCPT6
-
2.5.1.92 Solanum lycopersicum MP-1 K7W9N9 gene SlCPT6
-

Source Tissue

EC Number Source Tissue Comment Organism Textmining
2.5.1.28 additional information no expression of SlCPT1 in leaves, flowers, roots, and fruits Solanum lycopersicum
-
2.5.1.28 trichome type VI trichomes of leaves and stems, high expression level of SlCPT1 Solanum lycopersicum
-
2.5.1.92 fruit
-
 Solanum lycopersicum
-
2.5.1.92 fruit almost exclusively expressed in red fruit and root Solanum lycopersicum
-
2.5.1.92 additional information enzyme SlCPT6 is exclusively expressed in red fruit and roots Solanum lycopersicum
-
2.5.1.92 root
-
 Solanum lycopersicum
-
2.5.1.92 root almost exclusively expressed in red fruit and root Solanum lycopersicum
-

Substrates and Products (Substrate)

EC Number Substrates Comment Substrates Organism Products Comment (Products) Rev. Reac.
2.5.1.28 dimethylallyl diphosphate + isopentenyl diphosphate
-
 Solanum lycopersicum diphosphate + neryl diphosphate
-
 ?
2.5.1.28 dimethylallyl diphosphate + isopentenyl diphosphate dimethylallyl diphosphate is the preferred substrate Solanum lycopersicum diphosphate + neryl diphosphate
-
 ?
2.5.1.28 dimethylallyl diphosphate + isopentenyl diphosphate
-
 Solanum lycopersicum MP-1 diphosphate + neryl diphosphate
-
 ?
2.5.1.28 dimethylallyl diphosphate + isopentenyl diphosphate dimethylallyl diphosphate is the preferred substrate Solanum lycopersicum MP-1 diphosphate + neryl diphosphate
-
 ?
2.5.1.92 additional information product analysis by radio-TLC and GC-MS Solanum lycopersicum ?
-
 ?
2.5.1.92 additional information product analysis by radio-TLC and GC-MS Solanum lycopersicum MP-1 ?
-
 ?
2.5.1.92 neryl diphosphate + 2 isopentenyl diphosphate
-
 Solanum lycopersicum 2 diphosphate + (2Z,6Z)-farnesyl diphosphate
-
 ?
2.5.1.92 neryl diphosphate + 2 isopentenyl diphosphate neryl diphosphate is the preferred acceptor substrate Solanum lycopersicum 2 diphosphate + (2Z,6Z)-farnesyl diphosphate
-
 ?
2.5.1.92 neryl diphosphate + 2 isopentenyl diphosphate
-
 Solanum lycopersicum MP-1 2 diphosphate + (2Z,6Z)-farnesyl diphosphate
-
 ?
2.5.1.92 neryl diphosphate + 2 isopentenyl diphosphate neryl diphosphate is the preferred acceptor substrate Solanum lycopersicum MP-1 2 diphosphate + (2Z,6Z)-farnesyl diphosphate
-
 ?

Synonyms

EC Number Synonyms Comment Organism
2.5.1.28 NDPS1
-
 Solanum lycopersicum
2.5.1.28 neryl diphosphate synthase
-
 Solanum lycopersicum
2.5.1.28 short-chain cis-prenyldiphosphate synthase
-
 Solanum lycopersicum
2.5.1.28 short-chain CPT
-
 Solanum lycopersicum
2.5.1.92 short-chain cis-prenyldiphosphate synthase
-
 Solanum lycopersicum
2.5.1.92 short-chain SlCPT
-
 Solanum lycopersicum
2.5.1.92 SlCPT6
-
 Solanum lycopersicum

General Information

EC Number General Information Comment Organism
2.5.1.28 evolution gene SlCPT1 encoding the NDPS1 belongs to the CPT gene family. All the short-chain CPT genes from tomato, i.e. SlCPT1, SlCPT2 and SlCPT6, are closely linked to terpene synthase gene clusters. NDPS1 belongs to the short-chain cis-prenyldiphosphate synthases Solanum lycopersicum
2.5.1.28 malfunction RNAi-mediated suppression of NDPS1 leads to a large decrease in beta-phellandrene, which is produced from neryl diphosphate Solanum lycopersicum
2.5.1.28 physiological function NDPS1 catalyzes the formation of NPP, which is used as a substrate by beta-phellandrene synthase 1, PHS1, to produce beta-phellandrene and several other monoterpenes Solanum lycopersicum
2.5.1.92 evolution all the short-chain CPT genes from tomato (SlCPT1, SlCPT2 and SlCPT6) are closely linked to terpene synthase gene clusters. Six of the seven tomato CPT genes, SlCPT1, SlCPT2, SlCPT4, SlCPT5, SlCPT6 and SlCPT7, are in phylogenetic group 1 of the CPT superfamily Solanum lycopersicum