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Information on Organism Gopherus agassizii

Synonyms:
Agassiz's desert tortoise; desert tortoise; Gopherus agassizii; Gopherus agassizi; Gopherus polyphemus agassizii; USNM 7888; Xerobates agassizii Cooper, 1861; Xerobates agassizii;
TaxTree of Organism Gopherus agassizii
Condensed Tree View
cellular organisms
Eukaryota can be found in Brenda BRENDA pathways(superkingdom)
Opisthokonta can be found in Brenda BRENDA pathways(clade)
Metazoa can be found in Brenda BRENDA pathways(kingdom)
Eumetazoa can be found in Brenda BRENDA pathways(clade)
Bilateria can be found in Brenda BRENDA pathways(clade)
Deuterostomia can be found in Brenda BRENDA pathways(clade)
Chordata can be found in Brenda BRENDA pathways(phylum)
Craniata can be found in Brenda (subphylum)
Vertebrata can be found in Brenda BRENDA pathways(clade)
Gnathostomata can be found in Brenda BRENDA pathways(clade)
Teleostomi can be found in Brenda (clade)
Euteleostomi can be found in Brenda BRENDA pathways(clade)
Sarcopterygii can be found in Brenda BRENDA pathways(superclass)
Dipnotetrapodomorpha can be found in Brenda (clade)
Tetrapoda can be found in Brenda BRENDA pathways(clade)
Amniota can be found in Brenda BRENDA pathways(clade)
Sauropsida can be found in Brenda BRENDA pathways(clade)
Sauria can be found in Brenda BRENDA pathways(clade)
Archelosauria can be found in Brenda (clade)
Testudinata can be found in Brenda (subclass)
Testudines can be found in Brenda BRENDA pathways(order)
Cryptodira can be found in Brenda (suborder)
Durocryptodira can be found in Brenda (clade)
Testudinoidea can be found in Brenda BRENDA pathways(superfamily)
Testudinidae can be found in Brenda BRENDA pathways(family)
Gopherus can be found in Brenda (genus)
Gopherus agassizii can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(R)-cysteate degradation
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PWY-6642
(S)-reticuline biosynthesis I
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PWY-3581
3-(4-hydroxyphenyl)pyruvate biosynthesis
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PWY-5886
4-hydroxybenzoate biosynthesis I (eukaryotes)
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PWY-5754
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
Alanine, aspartate and glutamate metabolism
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ammonia assimilation cycle I
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PWY-6963
ammonia assimilation cycle II
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PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation II (anaerobic)
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P303-PWY
anaerobic energy metabolism (invertebrates, cytosol)
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PWY-7383
Arginine and proline metabolism
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Arginine biosynthesis
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arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
aspartate and asparagine metabolism
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atromentin biosynthesis
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PWY-7518
Biosynthesis of secondary metabolites
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C4 and CAM-carbon fixation
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C4 photosynthetic carbon assimilation cycle, NAD-ME type
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PWY-7115
C4 photosynthetic carbon assimilation cycle, PEPCK type
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PWY-7117
Carbon fixation in photosynthetic organisms
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coenzyme M biosynthesis
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coenzyme M biosynthesis II
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PWY-6643
Cysteine and methionine metabolism
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cysteine metabolism
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denitrification
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diethylphosphate degradation
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PWY-5491
Drug metabolism - other enzymes
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ethene biosynthesis III (microbes)
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PWY-6854
Fe(II) oxidation
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PWY-6692
Folate biosynthesis
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gluconeogenesis
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glutamate and glutamine metabolism
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Glyoxylate and dicarboxylate metabolism
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indole-3-acetate biosynthesis II
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PWY-581
indole-3-acetate biosynthesis VI (bacteria)
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TRPIAACAT-PWY
Isoquinoline alkaloid biosynthesis
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L-arginine biosynthesis I (via L-ornithine)
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ARGSYN-PWY
L-arginine biosynthesis II (acetyl cycle)
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ARGSYNBSUB-PWY
L-arginine biosynthesis IV (archaea)
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PWY-7400
L-arginine degradation XIII (reductive Stickland reaction)
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PWY-8187
L-arginine degradation XIV (oxidative Stickland reaction)
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PWY-6344
L-asparagine degradation III (mammalian)
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ASPARAGINE-DEG1-PWY-1
L-aspartate biosynthesis
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ASPARTATESYN-PWY
L-aspartate degradation I
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ASPARTATE-DEG1-PWY
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-citrulline biosynthesis
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CITRULBIO-PWY
L-citrulline degradation
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CITRULLINE-DEG-PWY
L-glutamate degradation II
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GLUTDEG-PWY
L-glutamine biosynthesis I
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GLNSYN-PWY
L-phenylalanine biosynthesis I
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PHESYN
L-phenylalanine degradation II (anaerobic)
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ANAPHENOXI-PWY
L-phenylalanine degradation III
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PWY-5079
L-phenylalanine degradation IV (mammalian, via side chain)
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PWY-6318
L-phenylalanine degradation VI (reductive Stickland reaction)
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PWY-8014
L-tryptophan degradation IV (via indole-3-lactate)
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TRPKYNCAT-PWY
L-tryptophan degradation VIII (to tryptophol)
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PWY-5081
L-tryptophan degradation XIII (reductive Stickland reaction)
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PWY-8017
L-tyrosine biosynthesis I
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TYRSYN
L-tyrosine degradation I
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TYRFUMCAT-PWY
L-tyrosine degradation II
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PWY-5151
L-tyrosine degradation III
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PWY3O-4108
L-tyrosine degradation IV (to 4-methylphenol)
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PWY-7514
L-tyrosine degradation V (reductive Stickland reaction)
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PWY-8016
lipid metabolism
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malate/L-aspartate shuttle pathway
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MALATE-ASPARTATE-SHUTTLE-PWY
Metabolic pathways
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methyl indole-3-acetate interconversion
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PWY-6303
methylsalicylate degradation
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PWY18C3-24
Microbial metabolism in diverse environments
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NAD metabolism
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NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction VII (denitrification)
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PWY-6748
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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non-pathway related
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Novobiocin biosynthesis
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Oxidative phosphorylation
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oxidative phosphorylation
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Phenylalanine metabolism
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Phenylalanine, tyrosine and tryptophan biosynthesis
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phosphate acquisition
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PWY-6348
Purine metabolism
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purine metabolism
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Pyrimidine metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
retinol biosynthesis
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PWY-6857
Riboflavin metabolism
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rosmarinic acid biosynthesis I
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PWY-5048
succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
sulfolactate degradation III
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PWY-6638
sulfopterin metabolism
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superoxide radicals degradation
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DETOX1-PWY
superpathway of methylsalicylate metabolism
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PWY18C3-25
TCA cycle VIII (Chlamydia)
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TCA-1
Thiamine metabolism
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Tropane, piperidine and pyridine alkaloid biosynthesis
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Tryptophan metabolism
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tryptophan metabolism
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Tyrosine metabolism
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urea cycle
vitamin B1 metabolism
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LINKS TO OTHER DATABASES (specific for Gopherus agassizii)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA