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Information on Organism Xanthobacter flavus

Synonyms:
ATCC 35867; BCRC 12271; CCRC 12271; CCRC:12271; CIP 105434; culture-collection:NRRL:B:14838; culture-collection:VKM:B:2106; DSM 338; IFO 14759; JCM 1204; LMG 7045; LMG:7045; NBRC 14759; NCIMB 10071; NRRL B-14838; strain 301; VKM B-2106; Xanthobacter flavus Malik and Claus 1979 (Approved Lists 1980) emend. Reding et al. 1992; Xanthobacter flavus;
Word Map for Organism Xanthobacter flavus
TaxTree of Organism Xanthobacter flavus
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Alphaproteobacteria can be found in Brenda BRENDA pathways(class)
Hyphomicrobiales can be found in Brenda BRENDA pathways(order)
Xanthobacteraceae can be found in Brenda BRENDA pathways(family)
Xanthobacter can be found in Brenda BRENDA pathways(genus)
Xanthobacter flavus can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
(S)-lactate fermentation to propanoate, acetate and hydrogen
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PWY-8086
1,2,4,5-tetrachlorobenzene degradation
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PWY-6099
1,2,4-trichlorobenzene degradation
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PWY-6091
1,2-dichlorobenzene degradation
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PWY-6090
1,2-dichloroethane degradation
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12DICHLORETHDEG-PWY
1,3-dichlorobenzene degradation
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PWY-6081
1,3-propanediol biosynthesis (engineered)
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PWY-7385
1,4-dichlorobenzene degradation
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14DICHLORBENZDEG-PWY
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
2,4-dichlorotoluene degradation
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PWY-6190
2,5-dichlorotoluene degradation
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PWY-6191
3,4-dichlorotoluene degradation
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PWY-6192
3-chlorocatechol degradation
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3-chlorocatechol degradation I (ortho)
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PWY-6089
3-chlorocatechol degradation II (ortho)
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PWY-6193
3-chlorotoluene degradation I
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PWY-6103
4,5-dichlorocatechol degradation
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PWY-6093
4-chlorocatechol degradation
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PWY-6087
4-methylcatechol degradation (ortho cleavage)
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PWY-6185
5-chloro-3-methyl-catechol degradation
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PWY-6102
acetate fermentation
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Bifidobacterium shunt
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P124-PWY
Biosynthesis of ansamycins
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Biosynthesis of secondary metabolites
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butachlor degradation
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PWY-7771
Butanoate metabolism
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
Caprolactam degradation
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Carbon fixation in photosynthetic organisms
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Chloroalkane and chloroalkene degradation
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chlorobenzene degradation
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PWY-6083
Chlorocyclohexane and chlorobenzene degradation
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chlorosalicylate degradation
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PWY-6107
cyclohexanol degradation
degradation of pentoses
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Entner-Doudoroff pathway I
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PWY-8004
ethanol degradation IV
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PWY66-162
ethanol fermentation
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fluoroacetate degradation
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PWY-6646
Fluorobenzoate degradation
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formaldehyde assimilation II (assimilatory RuMP Cycle)
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PWY-1861
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
formaldehyde oxidation VI (H4MPT pathway)
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PWY-1723
fructose 2,6-bisphosphate biosynthesis
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PWY66-423
Fructose and mannose metabolism
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gamma-hexachlorocyclohexane degradation
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GAMMAHEXCHLORDEG-PWY
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis II (Methanobacterium thermoautotrophicum)
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PWY-6142
gluconeogenesis III
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PWY66-399
glycerol degradation to butanol
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PWY-7003
glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
glycolysis V (Pyrococcus)
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P341-PWY
Glyoxylate and dicarboxylate metabolism
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heterolactic fermentation
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P122-PWY
Inositol phosphate metabolism
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Metabolic pathways
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Methane metabolism
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methanogenesis from CO2
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methanogenesis from H2 and CO2
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METHANOGENESIS-PWY
methanol oxidation to formaldehyde IV
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PWY-5506
methoxylated aromatic compound degradation II
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PWY-8305
methyl-coenzyme M oxidation to CO2
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PWY-5209
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
non-pathway related
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nucleoside and nucleotide degradation (archaea)
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PWY-5532
oxalate degradation II
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PWY-6695
oxidative decarboxylation of pyruvate
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Pentose and glucuronate interconversions
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Pentose phosphate pathway
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pentose phosphate pathway
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pentose phosphate pathway (non-oxidative branch) I
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NONOXIPENT-PWY
pentose phosphate pathway (non-oxidative branch) II
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PWY-8178
pentose phosphate pathway (partial)
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P21-PWY
photorespiration I
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PWY-181
photorespiration II
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PWY-8362
photorespiration III
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PWY-8363
photosynthesis
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Propanoate metabolism
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purine metabolism
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pyruvate decarboxylation to acetyl CoA II
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PWY-6970
pyruvate fermentation to acetate IV
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PWY-5485
pyruvate fermentation to ethanol I
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PWY-5480
Pyruvate metabolism
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reactive oxygen species degradation
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DETOX1-PWY-1
reductive acetyl coenzyme A pathway II (autotrophic methanogens)
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PWY-7784
reductive monocarboxylic acid cycle
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PWY-5493
Rubisco shunt
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PWY-5723
sedoheptulose bisphosphate bypass
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PWY0-1517
sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
sucrose degradation V (sucrose alpha-glucosidase)
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PWY66-373
superoxide radicals degradation
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DETOX1-PWY
superpathway of fermentation (Chlamydomonas reinhardtii)
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PWY4LZ-257
superpathway of glucose and xylose degradation
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PWY-6901
threonine metabolism
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Toluene degradation
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Tryptophan metabolism
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Ubiquinone and other terpenoid-quinone biosynthesis
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vitamin K-epoxide cycle
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
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oxalate enrichment culture
Manually annotated by BRENDA team
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soil samples are collected below the Ca-oxalate producing trees Milicia excelsa and Afzelia africana and in a similar soil distant from trees
Manually annotated by BRENDA team
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LINKS TO OTHER DATABASES (specific for Xanthobacter flavus)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA