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Information on Organism Oceanimonas doudoroffii

ATCC 27123; CCUG 12373; CCUG 16001; CIP 74.9; DSM 7028; JCM 21046; LMG 2180; LMG:2180; NBRC 103032; Oceanimonas doudoroffii corrig. (Baumann et al. 1972) Brown et al. 2001; Oceanimonas doudoroffii; Oceanomonas doudoroffii; Pseudomonas doudoroffii Baumann et al. 1972 (Approved Lists 1980); Pseudomonas doudoroffii;

TaxTree of Organism Oceanimonas doudoroffii

Condensed Tree View

cellular organisms

can be found in Brenda

BRENDA pathways

(superkingdom)

Proteobacteria can be found in Brenda

can be found in Brenda

BRENDA pathways

(phylum)

Gammaproteobacteria can be found in Brenda

can be found in Brenda

BRENDA pathways

(class)

Aeromonadales can be found in Brenda

can be found in Brenda

BRENDA pathways

(order)

Aeromonadaceae can be found in Brenda

can be found in Brenda

BRENDA pathways

(family)

Oceanimonas can be found in Brenda

can be found in Brenda

BRENDA pathways

(genus)

Oceanimonas doudoroffii

can be found in Brenda

BRENDA pathways

(species)

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(S)-propane-1,2-diol degradation

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PWY-7013

1,3-propanediol biosynthesis (engineered)

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PWY-7385

2,4-dinitrotoluene degradation

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PWY-5642

3-methylbutanol biosynthesis (engineered)

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PWY-6871

acetaldehyde biosynthesis I

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PWY-6333

acetyl CoA biosynthesis

acetyl CoA biosynthesis

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acetylene degradation (anaerobic)

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P161-PWY

acrylate degradation I

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PWY-6373

adenosine ribonucleotides de novo biosynthesis

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PWY-7219

alpha-Linolenic acid metabolism

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Arginine and proline metabolism

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Arginine biosynthesis

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arginine metabolism

arginine metabolism

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arsenate detoxification I

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PWY-8264

arsenate detoxification III

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PWY-8263

arsenic detoxification (plants)

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PWY-8259

arsenic detoxification (yeast)

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PWY-4621

Atrazine degradation

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beta-alanine degradation I

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BETA-ALA-DEGRADATION-I-PWY

beta-alanine degradation II

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PWY-1781

beta-Alanine metabolism

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Biosynthesis of secondary metabolites

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butanol and isobutanol biosynthesis (engineered)

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PWY-7396

Calvin-Benson-Bassham cycle

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CALVIN-PWY

Carbon fixation in photosynthetic organisms

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Chloroalkane and chloroalkene degradation

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degradation of hexoses

degradation of hexoses

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degradation of pentoses

degradation of pentoses

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dimethylsulfoniopropanoate degradation I (cleavage)

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PWY-6046

Drug metabolism - cytochrome P450

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ethanol degradation I

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ETOH-ACETYLCOA-ANA-PWY

ethanol degradation II

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PWY66-21

ethanol fermentation

ethanol fermentation

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ethanolamine utilization

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PWY0-1477

Fatty acid degradation

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formaldehyde assimilation II (assimilatory RuMP Cycle)

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PWY-1861

Fructose and mannose metabolism

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fructose degradation

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PWY0-1314

Galactose metabolism

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glycine metabolism

glycine metabolism

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Glycine, serine and threonine metabolism

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glycolysis

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Glycolysis / Gluconeogenesis

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glycolysis I (from glucose 6-phosphate)

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GLYCOLYSIS

glycolysis II (from fructose 6-phosphate)

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PWY-5484

glycolysis III (from glucose)

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ANAGLYCOLYSIS-PWY

glycolysis IV

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PWY-1042

Glyoxylate and dicarboxylate metabolism

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heterolactic fermentation

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P122-PWY

Inositol phosphate metabolism

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L-arginine degradation II (AST pathway)

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AST-PWY

L-isoleucine degradation II

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PWY-5078

L-leucine degradation III

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PWY-5076

L-methionine degradation III

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PWY-5082

L-phenylalanine degradation III

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PWY-5079

L-tryptophan degradation V (side chain pathway)

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PWY-3162

L-tyrosine degradation III

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PWY3O-4108

L-valine degradation I

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VALDEG-PWY

L-valine degradation II

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PWY-5057

leucine metabolism

leucine metabolism

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lipid metabolism

lipid metabolism

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Metabolic pathways

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Metabolism of xenobiotics by cytochrome P450

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Methane metabolism

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methionine metabolism

methionine metabolism

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Microbial metabolism in diverse environments

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mixed acid fermentation

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FERMENTATION-PWY

myo-inositol degradation I

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P562-PWY

Naphthalene degradation

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non-pathway related

non-pathway related

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noradrenaline and adrenaline degradation

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PWY-6342

Pentose phosphate pathway

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phenylalanine metabolism

phenylalanine metabolism

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phenylethanol biosynthesis

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PWY-5751

photorespiration I

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PWY-181

photosynthesis

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phytol degradation

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PWY66-389

Propanoate metabolism

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propanol degradation

propanol degradation

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propanoyl-CoA degradation II

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PWY-7574

Purine metabolism

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purine metabolism

purine metabolism

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pyruvate fermentation to ethanol I

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PWY-5480

pyruvate fermentation to ethanol II

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PWY-5486

pyruvate fermentation to ethanol III

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PWY-6587

pyruvate fermentation to isobutanol (engineered)

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PWY-7111

Pyruvate metabolism

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Retinol metabolism

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ribose phosphorylation

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RIBOKIN-PWY

salidroside biosynthesis

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PWY-6802

serotonin degradation

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PWY-6313

serotonin metabolism

serotonin metabolism

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Sulfur metabolism

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superpathway of dimethylsulfoniopropanoate degradation

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PWY-6049

superpathway of fermentation (Chlamydomonas reinhardtii)

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PWY4LZ-257

Thiamine metabolism

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Tyrosine metabolism

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tyrosine metabolism

tyrosine metabolism

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urea cycle

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urea degradation II

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PWY-5704

valine metabolism

valine metabolism

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Valine, leucine and isoleucine degradation

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Oceanimonas doudoroffii

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culture condition:arginine-grown cell

Oceanimonas doudoroffii

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Manually annotated by BRENDA team

culture condition:glutamate-grown cell

Oceanimonas doudoroffii

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Manually annotated by BRENDA team

culture condition:glycolate-grown cell

Oceanimonas doudoroffii

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Manually annotated by BRENDA team

culture condition:ornithine-grown cell

Oceanimonas doudoroffii

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Manually annotated by BRENDA team

additional information

Oceanimonas doudoroffii

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influence of growth conditions on enzyme expression, overview

Manually annotated by BRENDA team

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Oceanimonas doudoroffii

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Manually annotated by BRENDA team

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NCBI: Taxonomy, PubMed, Genome

SILVA: 16S/18S rRNA, 23S/28S rRNA

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Release 2023.1 (January 2023)