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Information on Organism Nitrobacter winogradskyi

Synonyms:
ATCC 25391; "Bacillus nirobakter" (sic) Castellani and Chamers 1919; Bacillus nirobakter; "Bacterium nitrobacter" Lehmann and Neumann 1899; Bacterium nitrobacter; CIP 104748; DSM 10237; Nitrobacter agilis; Nitrobacter winogradskyi; Nitrobacter winogradskyi Winslow et al. 1917; strain Nb-255; Nitrobacter winogradskii;
Word Map for Organism Nitrobacter winogradskyi
TaxTree of Organism Nitrobacter winogradskyi
Condensed Tree View
cellular organisms
Bacteria can be found in Brenda BRENDA pathways(superkingdom)
Proteobacteria can be found in Brenda BRENDA pathways(phylum)
Alphaproteobacteria can be found in Brenda BRENDA pathways(class)
Hyphomicrobiales can be found in Brenda BRENDA pathways(order)
Bradyrhizobiaceae can be found in Brenda BRENDA pathways(family)
Nitrobacter can be found in Brenda BRENDA pathways(genus)
Nitrobacter winogradskyi can be found in Brenda BRENDA pathways(species)
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PATHWAY
BRENDA Link
KEGG Link
MetaCyc Link
1-butanol autotrophic biosynthesis (engineered)
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PWY-6886
4-aminobutanoate degradation V
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PWY-5022
aerobic respiration I (cytochrome c)
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PWY-3781
aerobic respiration II (cytochrome c) (yeast)
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PWY-7279
alanine metabolism
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Alanine, aspartate and glutamate metabolism
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alkylnitronates degradation
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PWY-723
ammonia assimilation cycle I
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PWY-6963
ammonia assimilation cycle II
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PWY-6964
ammonia assimilation cycle III
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AMMASSIM-PWY
ammonia oxidation I (aerobic)
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AMMOXID-PWY
ammonia oxidation II (anaerobic)
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P303-PWY
ammonia oxidation III
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PWY-2242
Arginine biosynthesis
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arsenite to oxygen electron transfer
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PWY-4521
arsenite to oxygen electron transfer (via azurin)
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PWY-7429
Ascorbate and aldarate metabolism
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assimilatory sulfate reduction II
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SULFMETII-PWY
assimilatory sulfate reduction III
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PWY-6683
assimilatory sulfate reduction IV
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PWY1ZNC-1
ATP biosynthesis
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PWY-7980
autoinducer AI-1 biosynthesis
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PWY-6157
Bifidobacterium shunt
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P124-PWY
Biosynthesis of secondary metabolites
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Calvin-Benson-Bassham cycle
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CALVIN-PWY
Caprolactam degradation
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Carbon fixation in photosynthetic organisms
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Carbon fixation pathways in prokaryotes
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carbon tetrachloride degradation II
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PWY-5372
chlorate reduction
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PWY-6529
Citrate cycle (TCA cycle)
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citric acid cycle
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Cysteine and methionine metabolism
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D-xylose degradation to ethylene glycol (engineered)
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PWY-7178
denitrification
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detoxification of reactive carbonyls in chloroplasts
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PWY-6786
dissimilatory sulfate reduction I (to hydrogen sufide))
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DISSULFRED-PWY
Drug metabolism - cytochrome P450
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Entner-Doudoroff pathway I
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PWY-8004
erythritol biosynthesis I
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PWY-8372
erythritol biosynthesis II
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PWY-8373
ethene biosynthesis IV (engineered)
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PWY-7126
ethene biosynthesis V (engineered)
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PWY-7124
Fe(II) oxidation
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PWY-6692
formaldehyde assimilation III (dihydroxyacetone cycle)
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P185-PWY
formate to nitrite electron transfer
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PWY0-1585
gluconeogenesis I
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GLUCONEO-PWY
gluconeogenesis III
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PWY66-399
glutamate and glutamine metabolism
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glycerol degradation to butanol
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PWY-7003
Glycerolipid metabolism
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glycine metabolism
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Glycine, serine and threonine metabolism
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glycolysis
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Glycolysis / Gluconeogenesis
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glycolysis I (from glucose 6-phosphate)
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GLYCOLYSIS
glycolysis II (from fructose 6-phosphate)
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PWY-5484
glycolysis III (from glucose)
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ANAGLYCOLYSIS-PWY
glycolysis IV
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PWY-1042
Glyoxylate and dicarboxylate metabolism
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glyoxylate cycle
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GLYOXYLATE-BYPASS
heme a biosynthesis
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PWY-7856
heterolactic fermentation
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P122-PWY
hydrogen production VI
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PWY-6780
L-alanine degradation II (to D-lactate)
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ALACAT2-PWY
L-aspartate degradation II (aerobic)
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PWY-8291
L-aspartate degradation III (anaerobic)
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PWY-8294
L-glutamate degradation I
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GLUTAMATE-DEG1-PWY
L-glutamate degradation V (via hydroxyglutarate)
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P162-PWY
L-glutamate degradation XI (reductive Stickland reaction)
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PWY-8190
L-glutamine biosynthesis I
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GLNSYN-PWY
L-glutamine degradation II
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GLUTAMINEFUM-PWY
L-tryptophan degradation X (mammalian, via tryptamine)
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PWY-6307
lipid metabolism
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Metabolic pathways
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Methane metabolism
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methane oxidation to methanol I
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PWY-1641
methanogenesis from acetate
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METH-ACETATE-PWY
methylaspartate cycle
Microbial metabolism in diverse environments
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mixed acid fermentation
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FERMENTATION-PWY
Monobactam biosynthesis
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NAD metabolism
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NAD(P)/NADPH interconversion
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PWY-5083
NADPH to cytochrome c oxidase via plastocyanin
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PWY-8271
Nicotinate and nicotinamide metabolism
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nitrate assimilation
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nitrate reduction I (denitrification)
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DENITRIFICATION-PWY
nitrate reduction II (assimilatory)
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PWY-381
nitrate reduction IV (dissimilatory)
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PWY-5674
nitrate reduction V (assimilatory)
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PWY-5675
nitrate reduction VII (denitrification)
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PWY-6748
nitrifier denitrification
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PWY-7084
nitrite-dependent anaerobic methane oxidation
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PWY-6523
Nitrogen metabolism
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nitrogen remobilization from senescing leaves
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PWY-6549
Nitrotoluene degradation
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non-pathway related
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nucleoside and nucleotide degradation (archaea)
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PWY-5532
Oxidative phosphorylation
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oxidative phosphorylation
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partial TCA cycle (obligate autotrophs)
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PWY-5913
Pentose and glucuronate interconversions
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perchlorate reduction
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PWY-6530
Photosynthesis
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photosynthesis
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photosynthesis light reactions
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PWY-101
Porphyrin and chlorophyll metabolism
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Purine metabolism
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purine metabolism
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pyruvate fermentation to butanol I
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PWY-6583
Pyruvate metabolism
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reductive acetyl coenzyme A pathway
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reductive acetyl coenzyme A pathway I (homoacetogenic bacteria)
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CODH-PWY
Retinol metabolism
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Rubisco shunt
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PWY-5723
selenate reduction
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PWY-6932
Selenocompound metabolism
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succinate to chytochrome c oxidase via cytochrome c6
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PWY1YI0-2
succinate to cytochrome c oxidase via plastocyanin
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PWY1YI0-3
sucrose biosynthesis I (from photosynthesis)
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SUCSYN-PWY
sulfate activation for sulfonation
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PWY-5340
sulfate reduction
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sulfide oxidation IV (mitochondria)
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PWY-7927
sulfite oxidation III
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PWY-5278
sulfite oxidation IV (sulfite oxidase)
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PWY-5326
Sulfur metabolism
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superpathway of glucose and xylose degradation
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PWY-6901
Taurine and hypotaurine metabolism
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TCA cycle I (prokaryotic)
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TCA
TCA cycle II (plants and fungi)
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PWY-5690
TCA cycle III (animals)
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PWY66-398
TCA cycle IV (2-oxoglutarate decarboxylase)
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P105-PWY
TCA cycle V (2-oxoglutarate synthase)
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PWY-6969
TCA cycle VI (Helicobacter)
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REDCITCYC
TCA cycle VII (acetate-producers)
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PWY-7254
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis
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PWY-5410
Tryptophan metabolism
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Tyrosine metabolism
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Ubiquinone and other terpenoid-quinone biosynthesis
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Valine, leucine and isoleucine degradation
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Vitamin B6 metabolism
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vitamin K-epoxide cycle
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ORGANISM
COMMENTARY hide
LITERATURE
UNIPROT
SEQUENCE DB
SOURCE
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SOURCE TISSUE
ORGANISM
UNIPROT
COMMENTARY hide
LITERATURE
SOURCE
additional information
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cell growth conditions and ammonia/nitrite ratio, overview
Manually annotated by BRENDA team
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LOCALIZATION
ORGANISM
UNIPROT
COMMENTARY hide
GeneOntology No.
LITERATURE
SOURCE
additional information
the enzyme does not contain a signal peptide for protein translocation into the periplasm and that the cleaving of a signal peptide at the N terminus would severely disturb the structure of the N-terminal domain
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Manually annotated by BRENDA team
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LINKS TO OTHER DATABASES (specific for Nitrobacter winogradskyi)
NCBI: Taxonomy, PubMed, Genome
SILVA: 16S/18S rRNA, 23S/28S rRNA